G180338


Basic Information

Item Value
gene id G180338
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31564597 ~ 31564868 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244294
actaccagatcaggagaatctctcactatctttaataaactcctgaagacagagctcttcaaagagcacttactctcctaacacctctaacacactaactacttctaaccccatttccttcttcccctccttcacttctctatccctttatttcccttcgacctcctttaagccctatctaaaaatgggttatctaaattcctattactttgtacttcattattgtaagtcgctttggacaaaagcgtctgccaaatgaaatgtaatgtaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244294 True 272 lncRNA 0.38 1 31564597 31564868

Neighbor

gene id symbol gene type direction distance location
LOC103041957 NA coding downstream 23122 31519076 ~ 31541475 (-)
LOC111195087 NA coding downstream 55376 31499084 ~ 31509221 (-)
timm10b timm10b coding downstream 67879 31493584 ~ 31496718 (-)
ilk ilk,LOC107718724,LOC107720653 coding downstream 74236 31466629 ~ 31490361 (-)
nhlrc3 nhlrc3,LOC107671632 coding downstream 99805 31458438 ~ 31464792 (-)
LOC103030874 mtnr1bb,LOC103030874,LOC108423763,LOC107720651,LOC107693905,LOC108276622,LOC105890457 coding upstream 197033 31761901 ~ 31847969 (-)
LOC103041448 kpna7,LOC103041448,LOC108423764,LOC108277302,LOC107693907,LOC107720648,LOC107556882 coding upstream 525821 32090689 ~ 32096800 (-)
LOC103041136 LOC108423765 coding upstream 535333 32100201 ~ 32106911 (-)
cct8 cct8,LOC107693911,LOC107701129 coding upstream 700129 32264997 ~ 32276777 (-)
LOC103038234 grik1,grik1a,LOC107701130,LOC107693913,LOC107718733,LOC107555187 coding upstream 778471 32343339 ~ 32428813 (-)
G180315 NA non-coding downstream 141407 31422385 ~ 31423190 (-)
G180309 NA non-coding downstream 167575 31339559 ~ 31397022 (-)
G180295 LOC108423808 non-coding downstream 258250 31297767 ~ 31306347 (-)
G180287 NA non-coding downstream 411660 31152546 ~ 31152937 (-)
G180285 NA non-coding downstream 444121 31119112 ~ 31120476 (-)
G180342 NA non-coding upstream 16836 31581704 ~ 31581937 (-)
G180344 NA non-coding upstream 71479 31636347 ~ 31636548 (-)
G180373 NA non-coding upstream 177863 31742731 ~ 31742990 (-)
G180366 NA non-coding upstream 193230 31758098 ~ 31759438 (-)
G180454 chordc1 non-coding upstream 512496 32077364 ~ 32079824 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 606830 30946946 ~ 30957767 (-)
G179816 NA other downstream 2713492 28850690 ~ 28851105 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 3997905 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 4039209 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 4040462 27523131 ~ 27524135 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 329334 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 675311 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 871457 32436325 ~ 32584343 (-)
LOC103033173 NA other upstream 2240372 33805240 ~ 33855632 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 3868364 35433232 ~ 35470789 (-)

Expression


Co-expression Network