G180463


Basic Information

Item Value
gene id G180463
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 32113044 ~ 32208555 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244441
aaaaaaaaaaaaagatgcagagctttcagacctcaattaatgcaaagaaaacaagttcatattcataaagttttaagagttcaaaaatcaatatttggtggaataaccctggtttttaatcacagttttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctgcactcctggtgcaaaagatcaagcagttcagtttggtggtctgatggcttgtgatcatccatcttcctcttgattatattccagaggttggtaatttggtaaaatcaaagaaactcatcatttttaaatggtctcttatatttttccagagctgtataacagaaaagatcagatttgggctACATTGCTGTTGTGTGAAAGTAGGGGTGggataaaatatcatgatatatcaagatatattgtattgttttagtttgctacATATTAATGATATGAGCAAATTAAACTCCCTATGACTCACCCGAATTAATAGGATAAACCTACGGTGAAAAATATTAGTTGTGACCATTAAATCCAAAATTCCAGGTGTTTGCTTAAGTTGAAGTATTTTATTGTCTTCAGTAACACGGATACCAAGAAGTgttgtagatatattcagagcATCGCAGAGTATCACAGTATCGTGATGACATTTTGATCATGGGCAATGTATTAtgataatatgatataaaaaatgccctgtgattcccacccctagtgtgaATATGGTCTAAGTAGGGATTCATTTTCTCGGTCTCCTGGTTTCACAAACCAAACTGCAAAGCCTCATCCACACAGAAACCTCTTTATTCAACTAAGCAtgaagagagagcaaaagaagaatgttctatttctcttttattcctctctactttctctctttcacattcTCACTTGCTCATGTGGGAGACTCCCTGAACTTCTGTGGCAAGTGAGATATCTGGTATTTCTTATTAATTcctaataaaacactaagggCTTACAAAAGTTAAGAGTGTTCAAATGGTGTTGATTTTCATCATaatcaaattaaacaaacatttttggaGACAAAAGTTGAAAGAAAGTTGGACGTACAGAATCTCACAAAAGt

Function

GO: NA

KEGG:

id description
ko00100 Steroid biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU244441 True 1113 lncRNA 0.35 2 32113044 32208555

Neighbor

gene id symbol gene type direction distance location
LOC103030242 chordc1 coding upstream 26601 32073627 ~ 32086443 (+)
LOC103032011 NA coding upstream 752776 31349241 ~ 31360268 (+)
mpzl1 LOC108423808 coding upstream 798605 31295065 ~ 31314439 (+)
ets2 ets2 coding upstream 868160 31237788 ~ 31244884 (+)
kcnj15 kcnj15 coding upstream 996349 31112015 ~ 31116695 (+)
map3k7cl map3k7cl coding downstream 72724 32281279 ~ 32298945 (+)
bach1 NA coding downstream 97902 32306457 ~ 32322948 (+)
LOC111195090 NA coding downstream 434957 32643512 ~ 32650332 (+)
LOC103029275 NA coding downstream 479198 32687753 ~ 32691484 (+)
LOC103036259 NA coding downstream 496376 32704931 ~ 32709254 (+)
G180426 kpna7,LOC103041448,LOC108423764,LOC108277302,LOC107693907,LOC107720648,LOC107556882 non-coding upstream 16235 32041645 ~ 32096809 (+)
G180403 NA non-coding upstream 193355 31919275 ~ 31919689 (+)
G180402 LOC108423819 non-coding upstream 198395 31913867 ~ 31914649 (+)
G180401 LOC108423819 non-coding upstream 218009 31892834 ~ 31895035 (+)
G180399 NA non-coding upstream 231340 31881407 ~ 31881704 (+)
G180472 NA non-coding downstream 4801 32213356 ~ 32213907 (+)
G180488 NA non-coding downstream 99974 32308529 ~ 32309577 (+)
G180490 NA non-coding downstream 120626 32329181 ~ 32330732 (+)
G180504 NA non-coding downstream 227815 32436370 ~ 32445624 (+)
G180510 NA non-coding downstream 242477 32451032 ~ 32488971 (+)
G180266 NA other upstream 679135 31433198 ~ 31433909 (+)
G180235 erg other upstream 961949 31139344 ~ 31151095 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 4587603 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 5196700 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 5233961 26830637 ~ 26879083 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 56443 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 841687 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 1964369 34172924 ~ 34328970 (+)
LOC103024954 LOC108423745 other downstream 2126021 34334576 ~ 34507324 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other downstream 3183966 35392521 ~ 35403624 (+)

Expression


Co-expression Network