G180521


Basic Information

Item Value
gene id G180521
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 32602759 ~ 32603043 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244509
ttcattaattgcacattgcaccagtaagagaagagtgtgaaggttcaattagcagagtaagagcacagttctgctctaaatattgcaatgcacacaacattatgggtgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggagcatctgtgaccaagacagcaagtctttgtgatgtatcaagagccacggtatccagggtaatgtcagcataccaccaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagagga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244509 True 285 lncRNA 0.44 1 32602759 32603043

Neighbor

gene id symbol gene type direction distance location
bach1 NA coding upstream 279811 32306457 ~ 32322948 (+)
map3k7cl map3k7cl coding upstream 303814 32281279 ~ 32298945 (+)
LOC103040837 rab38,LOC103040837,LOC108423822,LOC108277304,LOC107701102,LOC107718792,LOC107557212,LOC107693892 coding upstream 396983 32190848 ~ 32205776 (+)
LOC103040533 grm5,grm5a,LOC108423821,LOC107693909,LOC107720647,LOC107718729 coding upstream 415030 32112356 ~ 32187729 (+)
LOC103030242 chordc1 coding upstream 516316 32073627 ~ 32086443 (+)
LOC111195090 NA coding downstream 40469 32643512 ~ 32650332 (+)
LOC103029275 NA coding downstream 84710 32687753 ~ 32691484 (+)
LOC103036259 NA coding downstream 101888 32704931 ~ 32709254 (+)
LOC103028331 frem2,frem2a,LOC107720635,LOC107701139,LOC108276566,LOC107555183 coding downstream 506948 33109991 ~ 33275686 (+)
LOC107197579 trim47,LOC108423837,LOC107701143,LOC107718738,LOC107557227,LOC107720633 coding downstream 683392 33286435 ~ 33297195 (+)
G180510 NA non-coding upstream 113788 32451032 ~ 32488971 (+)
G180504 NA non-coding upstream 157135 32436370 ~ 32445624 (+)
G180490 NA non-coding upstream 272027 32329181 ~ 32330732 (+)
G180488 NA non-coding upstream 293182 32308529 ~ 32309577 (+)
G180472 NA non-coding upstream 388852 32213356 ~ 32213907 (+)
G180591 NA non-coding downstream 15502 32618545 ~ 32618824 (+)
G180595 sod1,LOC106604042 non-coding downstream 48289 32651332 ~ 32658387 (+)
G180612 NA non-coding downstream 197744 32800787 ~ 32802387 (+)
G180642 NA non-coding downstream 360898 32963941 ~ 32964260 (+)
G180643 NA non-coding downstream 364168 32967211 ~ 32967542 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other upstream 328961 32264998 ~ 32273798 (+)
G180266 NA other upstream 1168850 31433198 ~ 31433909 (+)
G180235 erg other upstream 1451664 31139344 ~ 31151095 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 5077318 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 5686415 26913750 ~ 26916344 (+)
ufm1 ufm1,LOC107701138 other downstream 447199 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 1569881 34172924 ~ 34328970 (+)
LOC103024954 LOC108423745 other downstream 1731533 34334576 ~ 34507324 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other downstream 2789478 35392521 ~ 35403624 (+)
LOC107197592 NA other downstream 2997440 35600483 ~ 35607593 (+)

Expression


Co-expression Network