G180576


Basic Information

Item Value
gene id G180576
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 32554579 ~ 32558540 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244575
tcacacactgtatctcctgtttctcttttatctccctcgcgctcatattctaatcccatacatagttctgcagtttctcagtgttttctgtcgtattttgcggctagcgcgagcacTTTAACCAAGAACTAAAgccacggaccacgaggtgccccgcgctgccgctgctgtgccgaatccgactccctgctgaatccgactccgctTCGtgaacagaatcggcacaacaccgcccgctgtacaactccgggAGAGAAAACAGCGCtgtgatgtagcattgccaaaTAGCAttacagcgcactcagaggaaagcacagagacccagctctgatacatcagctaacagacgcctgtgctgactgacatcacctttggagtgatgaggcaAAAGGGCCATCTACCCCCAGAGAGAGCAATTgagctctctctgactctggctgctaatggcaagctacatgaccttAGATTCAAACCAATTCTAATATTATAGAGGCAGCGCCATAATATGCTAGACCACTTGGAACCCCTAAAGCCCCTAAAGTTTTGaccaaattaatttaaataaataaatatagaaatttATATTTGCAGTTCAGAGTAGCGTAGTAGCCTAAGATCTCTGGATATTAACATCTGGCATGTGTGAATGTCTTCTATTAATTCTAAATAACTGTCAAAACATCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244575 True 686 lncRNA 0.46 2 32554579 32558540

Neighbor

gene id symbol gene type direction distance location
LOC103038234 grik1,grik1a,LOC107701130,LOC107693913,LOC107718733,LOC107555187 coding downstream 125766 32343339 ~ 32428813 (-)
cct8 cct8,LOC107693911,LOC107701129 coding downstream 277802 32264997 ~ 32276777 (-)
LOC103041136 LOC108423765 coding downstream 447668 32100201 ~ 32106911 (-)
LOC103041448 kpna7,LOC103041448,LOC108423764,LOC108277302,LOC107693907,LOC107720648,LOC107556882 coding downstream 457779 32090689 ~ 32096800 (-)
LOC103030874 mtnr1bb,LOC103030874,LOC108423763,LOC107720651,LOC107693905,LOC108276622,LOC105890457 coding downstream 706610 31761901 ~ 31847969 (-)
sod1 sod1,LOC106604042 coding upstream 92778 32651318 ~ 32658440 (-)
scaf4 scaf4,LOC106950580,LOC106934797 coding upstream 102676 32661216 ~ 32680718 (-)
LOC103035536 NA coding upstream 213265 32771805 ~ 32848226 (-)
LOC103035222 trpc4,LOC108423767 coding upstream 314270 32872810 ~ 32927753 (-)
LOC111195091 NA coding upstream 618223 33176763 ~ 33177497 (-)
G180570 NA non-coding downstream 97168 32456546 ~ 32457411 (-)
G180562 NA non-coding downstream 227757 32322101 ~ 32326822 (-)
G180540 NA non-coding downstream 289840 32263574 ~ 32264739 (-)
G180543 NA non-coding downstream 346010 32205121 ~ 32208569 (-)
G180454 chordc1 non-coding downstream 474755 32077364 ~ 32079824 (-)
G180582 NA non-coding upstream 44150 32602690 ~ 32603055 (-)
G180666 NA non-coding upstream 243426 32801966 ~ 32802373 (-)
G180668 NA non-coding upstream 280676 32839216 ~ 32908220 (-)
G180676 NA non-coding upstream 384654 32943194 ~ 32943820 (-)
G180677 NA non-coding upstream 408858 32967398 ~ 32967655 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other downstream 291981 32240179 ~ 32262598 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other downstream 482655 31894202 ~ 32071924 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 1596812 30946946 ~ 30957767 (-)
G179816 NA other downstream 3703474 28850690 ~ 28851105 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 4987887 27561845 ~ 27566692 (-)
LOC103033173 NA other upstream 1246700 33805240 ~ 33855632 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 2874692 35433232 ~ 35470789 (-)

Expression


Co-expression Network