G180676


Basic Information

Item Value
gene id G180676
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 32943194 ~ 32943820 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244718
tagtttgttccaccattggggaactctgtatgagaacagtctggattgctttgtgtgaatgtttgtttggtaaagcgaggcgacgttcattggaggagtgcagcggccgggaggtagcgtaagccttcaggagcgagtgcaggtaggaaggagctgttctgtcatcaccttgtaggcgattgtaagagctttgaatttgatgcgagcatcaactggtagccaatggagctcaatgagcagcggagtgacatgtgcccgttttggttggttgaagaccagacgtgctgctgcgttctggatcatctggagtggttttactacacaggccgggaggccagttagtacggcattgcagtagtcgaggcgtgagattaccacagcttgtaccaggagttgggtggcctgttgcgtcagaaacggtcgaatttttccgatgttgtaaagcgcaaagcggcaggattgagcaactgaggccacatggtgcgtgaagagaagctggtcatcaaccatgacacccaggttcctagcaacctttgtcggtgagagagagagagagtcgatggttatggcaaagttgtgttgaatagaaggttttgctggtatgaccagaagttcagtctttgagag

Function

GO: NA

KEGG:

id description
ko04136 Autophagy - other

RNA

RNA id representative length rna type GC content exon number start site end site
TU244718 True 627 lncRNA 0.50 1 32943194 32943820

Neighbor

gene id symbol gene type direction distance location
LOC103035222 trpc4,LOC108423767 coding downstream 15441 32872810 ~ 32927753 (-)
LOC103035536 NA coding downstream 94968 32771805 ~ 32848226 (-)
scaf4 scaf4,LOC106950580,LOC106934797 coding downstream 262476 32661216 ~ 32680718 (-)
sod1 sod1,LOC106604042 coding downstream 284754 32651318 ~ 32658440 (-)
LOC103038234 grik1,grik1a,LOC107701130,LOC107693913,LOC107718733,LOC107555187 coding downstream 514381 32343339 ~ 32428813 (-)
LOC111195091 NA coding upstream 232943 33176763 ~ 33177497 (-)
LOC103028027 LOC108423836,LOC107701140,LOC107720632,LOC107557229,LOC107718737 coding upstream 359995 33303815 ~ 33367594 (-)
LOC103027697 NA coding upstream 429680 33373500 ~ 33395265 (-)
LOC107197574 arfip2b,LOC108438961,LOC108276920,LOC107557232,LOC107718740,LOC107555180 coding upstream 455535 33399355 ~ 33446115 (-)
LOC103027380 LOC108438972,LOC108277286,LOC107718741,LOC107701146,LOC107555179,LOC105907404,LOC107720538,LOC107693876 coding upstream 582852 33526672 ~ 33746776 (-)
G180668 NA non-coding downstream 34974 32839216 ~ 32908220 (-)
G180666 NA non-coding downstream 140821 32801966 ~ 32802373 (-)
G180582 NA non-coding downstream 340139 32602690 ~ 32603055 (-)
G180576 NA non-coding downstream 384654 32554579 ~ 32558540 (-)
G180577 NA non-coding downstream 385664 32555832 ~ 32557530 (-)
G180677 NA non-coding upstream 23578 32967398 ~ 32967655 (-)
G180687 NA non-coding upstream 92240 33036060 ~ 33036360 (-)
G180707 NA non-coding upstream 142705 33086525 ~ 33086755 (-)
G180709 NA non-coding upstream 162340 33106160 ~ 33106465 (-)
G180778 NA non-coding upstream 339559 33283379 ~ 33283609 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other downstream 358851 32436325 ~ 32584343 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other downstream 680596 32240179 ~ 32262598 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other downstream 871270 31894202 ~ 32071924 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 1985427 30946946 ~ 30957767 (-)
G179816 NA other downstream 4092089 28850690 ~ 28851105 (-)
LOC103033173 NA other upstream 861420 33805240 ~ 33855632 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 2489412 35433232 ~ 35470789 (-)

Expression


Co-expression Network