G180707


Basic Information

Item Value
gene id G180707
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33086525 ~ 33086755 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244755
cctagcctggctggttaagttagcgttctggctgtcagacggcattagcctagcgattttccttcccttttttccacaaaagacgagtcagcgctgcgggcgagcgtgccgtggttgagcgctagcctgtgctaagctaacgctgccgctgatgccgttgatgattctaagctgtcctgtgtatatatgCTGTTACTCGGCAatgcgtcggcggagtgatacaggtttagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244755 True 231 lncRNA 0.53 1 33086525 33086755

Neighbor

gene id symbol gene type direction distance location
LOC103035222 trpc4,LOC108423767 coding downstream 158772 32872810 ~ 32927753 (-)
LOC103035536 NA coding downstream 238299 32771805 ~ 32848226 (-)
scaf4 scaf4,LOC106950580,LOC106934797 coding downstream 405807 32661216 ~ 32680718 (-)
sod1 sod1,LOC106604042 coding downstream 428085 32651318 ~ 32658440 (-)
LOC103038234 grik1,grik1a,LOC107701130,LOC107693913,LOC107718733,LOC107555187 coding downstream 657712 32343339 ~ 32428813 (-)
LOC111195091 NA coding upstream 90008 33176763 ~ 33177497 (-)
LOC103028027 LOC108423836,LOC107701140,LOC107720632,LOC107557229,LOC107718737 coding upstream 217060 33303815 ~ 33367594 (-)
LOC103027697 NA coding upstream 286745 33373500 ~ 33395265 (-)
LOC107197574 arfip2b,LOC108438961,LOC108276920,LOC107557232,LOC107718740,LOC107555180 coding upstream 312600 33399355 ~ 33446115 (-)
LOC103027380 LOC108438972,LOC108277286,LOC107718741,LOC107701146,LOC107555179,LOC105907404,LOC107720538,LOC107693876 coding upstream 439917 33526672 ~ 33746776 (-)
G180687 NA non-coding downstream 50165 33036060 ~ 33036360 (-)
G180677 NA non-coding downstream 118870 32967398 ~ 32967655 (-)
G180676 NA non-coding downstream 142705 32943194 ~ 32943820 (-)
G180668 NA non-coding downstream 178305 32839216 ~ 32908220 (-)
G180666 NA non-coding downstream 284152 32801966 ~ 32802373 (-)
G180709 NA non-coding upstream 19405 33106160 ~ 33106465 (-)
G180778 NA non-coding upstream 196624 33283379 ~ 33283609 (-)
G180785 NA non-coding upstream 231090 33317845 ~ 33318068 (-)
G180843 NA non-coding upstream 504883 33591638 ~ 33612072 (-)
G180832 NA non-coding upstream 511550 33598305 ~ 33662494 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other downstream 502182 32436325 ~ 32584343 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other downstream 823927 32240179 ~ 32262598 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other downstream 1014601 31894202 ~ 32071924 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 2128758 30946946 ~ 30957767 (-)
G179816 NA other downstream 4235420 28850690 ~ 28851105 (-)
LOC103033173 NA other upstream 718485 33805240 ~ 33855632 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 2346477 35433232 ~ 35470789 (-)

Expression


Co-expression Network