G180722


Basic Information

Item Value
gene id G180722
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33253282 ~ 33280927 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244777
tgtaagactggtggaggagaacatgatgccaagatgcataaaaactgtgattaaaaaccagggttattccaccaaatatggatttatgaactcttaaaaagaatataaatatgaatatgaacttgttttctttgcattatttgaggtctgaaagctctgcctcttttttgttattttagccatttctcattttctgtaaataaatgctctaaatgacaatatttttatttggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctaaaaatagcaaaatcagagaaactgattcagaaactgaagtggtctctaattttttttccagagctgtgtgtatgtTCATTCATCTAAAAGAAATAATTCAAcatgatattaaaatgttgtaaaaataaaacattgccgTACCTCAATGAAACATATTAGCAAagaaaagtatttaaaatgtacttaatcTCACACATTAAAGACCAGAATACACAGTCTAAACAGGGATCCACACAAACCTGCCAAAAcaggtttaataaaatacattttttggtcTTTATTGACCTAAATGCTACAATCTATTCATGGGGTTGTATTACTTTGTATTAgtgattaaaaagaaaaagctttttaactgtaatttaTCTTTCAGTTTCTAGTGTTTTGTCACTCCCCATTCCTAGAAATCagcactgttttttatttaactggaATTATCTGCCATTATATTTGTATCTGTGTGGTCAGTGTCTCTGGCCTTAAGAACAATAGAAACATTAATAGACtgatacattaaaataatagtctATCGAATAGTCTAATGTATAATGTCCTTAGAAAAGGTAAAACACTGGACTGAGTTAATCAGTTAAATCAAAACATAGAACAAAATGAAATTTATAAAACAGAAGgctaataaacataaaaccaaatgttaaatattcaatatattcactatattgttcattatataTTGTTCGTCAGTAGCCaataacattttatgttcattaTTCAAACAGGACAGGATTTCATTCATTGTGCACAAAAGTCCCACTGTGTGTAGAGAacactgaatactgattacctgcTGCAAGTGTATTGTTTACCTAGCTTGGTCAGAAGCCATACACGGTTTCACAAGTTTACACTCAACCATGTGTGctgctcttatttttctgttgttgattttttaaacagtgtattgTATATCTTTTCACCTGCTCACTTGTATTTCATCTACACTGGCTGTTGTGTTACACAAGAGGACAGAGTATGTAAGTATTTGAGAGTATGATAGTGGTGAGAGGTGGGTAGCCTAAACATTTTTCATTACATCCATTAGATGAGAATAAAAGTTTGTACTCTTCTACAGTGTGAAAGGGTAAGAATCAGATACACAAAAAGTACTGAGTTCACTATAATAACAGATATTGTTTTAATAGTTACGAGAAAAATGAGAACTATATTTATCATATACAGAAATGCAGTAATCAGATGACATCAGAGGAtcaagtgataaaaaaaaacagggtccAACATGAAAGTGAAAATGCTTAATCTTGAGGCGTAATTTATGGAAATGCCATAAACTCACTACACTAATCTCTATTGTATCTGTTACTGGTGTTGCAACAACCCAACTGACCctgggcctcatgtactaagacttgcgtgaacttcctactaaaatgttccgtacgctcagacctgaaaagttccgtacgcacaaaaaaatccggatttatcaaaccgtgcgtagACAGAATCccacgtactttctcttagtacatcgcaatcaactgccatgACTCCTtcctcaattacgcagagtataaagttataataataataataattattataataatattttttaattgtattattctaagatggataataaatgcttttatttaaatgctttaaaccagttgcttaccaagaagccGCCCGTCACGCACTCGGcttattttcttattctcttctgctcttggaaatctaaaacggTTTATAAAgtcagtcatcatcatgggccaaaaaaacataatggtcacggaaaatgAGCTCTCAGTGAATTcggccattagcaatattttccaataatgcaaacgctgccatctccaacaactccagcgcaaacttttatgcatgtttatataatctaggctaagAGGATTATTTAtgtaagccaatgaaattgtctgattaattgactttattttacccaataatcgCTTACTACAAcgtgtgcataaaggatatcttaatagttgtaatttcaatgcatcgcctctaagtgtcgccaaatgacaaaaacccAATATATacgcagaaaaaaaaaggtatACGCCCGAAACGAAAGTGCcgtgggggaacgcactttctcacattcaagtcaaatttagtacatctgaccgtgagcgtgaaatgtggcgtacgcacctttagtacatgaggccccctATGCTTGTGTCTAGAGGTGCTCCAATATGAAAAAATGTGGCCGACGTCCAACAAAATGATATAATTGGCTGAAGCCCGAAGGCCAAATTCCGAACAGTTTTTTCACAGGTTATCACAGGTGACCAGAgcgtaaaaatgaacttaaacctacCATTTCTCAGCTGTCGACTCTCTCTGGATCCGTTCCATGCAAGCATTCTAGCTCTACCCTCTAGAAACACTGAGTAACTAGACTCAATGTTGCgtataaattattgttttgtcaAATATTTGATGTATCCCTAGCTGCCTCTTAGCAGTTTTTAACTTACATCAAAACTACTATTTTACACACTTCCTTAGATATTCTGCTTTGTCTTCAACAAAGGGTTAAAAAGTAAGTTACAAATATTATGTTACAAGGACtagatatttttacttttatttttcatatgcaGGCAAAATGCACATGAAACAGTAATAAAATTAtctctgactgtgtgtgtttttccattttctgaACGTTTCATGctaaattcaaaaataaaaaaattcagtgAAAAACGTAATTATTTTCCCATGTAGTACAGTAAAGAAGAAATGGGTTTTCATTCAGTTTTTCAATGTTCTAGTTTTTCATTTTAGCTTTCCGTAAacagaatttcaggaaaaatctgatttttccaTTATGTATCTTATAACCCACATCTGTTGGTATAATCCAACTAACAGAAGATGATTTTGaagatacaattttttttttttcatttttcctaaaattaCGATTGTGAGGAGCAGAGAaggaaaaactaaatattataaaatttgGGTGAAAACCTATTTCTTCTACACTGCactaaatgt

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0021872 forebrain generation of neurons biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0021884 forebrain neuron development biological_process
GO:0048856 anatomical structure development biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:0060322 head development biological_process

KEGG:

id description
ko04360 Axon guidance

RNA

RNA id representative length rna type GC content exon number start site end site
TU244777 True 3331 lncRNA 0.33 4 33253282 33280927

Neighbor

gene id symbol gene type direction distance location
LOC103036259 NA coding upstream 544028 32704931 ~ 32709254 (+)
LOC103029275 NA coding upstream 561798 32687753 ~ 32691484 (+)
LOC111195090 NA coding upstream 602950 32643512 ~ 32650332 (+)
bach1 NA coding upstream 930334 32306457 ~ 32322948 (+)
map3k7cl map3k7cl coding upstream 954337 32281279 ~ 32298945 (+)
LOC107197579 trim47,LOC108423837,LOC107701143,LOC107718738,LOC107557227,LOC107720633 coding downstream 5508 33286435 ~ 33297195 (+)
synj1 NA coding downstream 577749 33858676 ~ 33905991 (+)
c20h21orf59 c10h21orf59,cunh21orf59,LOC103033817,LOC107691672,LOC105907446 coding downstream 630297 33911224 ~ 33918741 (+)
mis18a NA coding downstream 680029 33960956 ~ 33967651 (+)
LOC103026520 LOC108423747 coding downstream 727994 34008921 ~ 34123671 (+)
G180710 NA non-coding upstream 146479 33106586 ~ 33106803 (+)
G180708 NA non-coding upstream 146748 33106183 ~ 33106534 (+)
G180698 NA non-coding upstream 194240 33057950 ~ 33059042 (+)
G180686 NA non-coding upstream 216921 33036051 ~ 33036361 (+)
G180643 NA non-coding upstream 285740 32967211 ~ 32967542 (+)
G180726 NA non-coding downstream 730 33281657 ~ 33283041 (+)
G180734 NA non-coding downstream 33583 33314510 ~ 33314931 (+)
G180746 NA non-coding downstream 92647 33373574 ~ 33395329 (+)
G180804 NA non-coding downstream 185643 33466570 ~ 33466780 (+)
G180807 NA non-coding downstream 233595 33514522 ~ 33539422 (+)
ufm1 ufm1,LOC107701138 other upstream 185350 33050242 ~ 33067932 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other upstream 979484 32264998 ~ 32273798 (+)
G180266 NA other upstream 1819373 31433198 ~ 31433909 (+)
G180235 erg other upstream 2102187 31139344 ~ 31151095 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 5727841 27524302 ~ 27525441 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 891997 34172924 ~ 34328970 (+)
LOC103024954 LOC108423745 other downstream 1053649 34334576 ~ 34507324 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other downstream 2111594 35392521 ~ 35403624 (+)
LOC107197592 NA other downstream 2319556 35600483 ~ 35607593 (+)
LOC103044041 NA other downstream 2404077 35685004 ~ 35702995 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G483460 NA non-coding CI01000339 null 4544840 ~ 4573201 (-)
rainbow trout (Oncorhynchus mykiss) G488078 NA unknown NC_048570.1 CM023224.2 24630969 ~ 24631396 (+)
rainbow trout (Oncorhynchus mykiss) G609457 NA non-coding NC_048571.1 CM023225.2 42847466 ~ 42847894 (+)