G180734


Basic Information

Item Value
gene id G180734
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33314510 ~ 33314931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244791
cagtttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattccaaatgttgtcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtg

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244791 True 241 lncRNA 0.36 2 33314510 33314931

Neighbor

gene id symbol gene type direction distance location
LOC107197579 trim47,LOC108423837,LOC107701143,LOC107718738,LOC107557227,LOC107720633 coding upstream 17315 33286435 ~ 33297195 (+)
LOC103028331 frem2,frem2a,LOC107720635,LOC107701139,LOC108276566,LOC107555183 coding upstream 38824 33109991 ~ 33275686 (+)
LOC103036259 NA coding upstream 605256 32704931 ~ 32709254 (+)
LOC103029275 NA coding upstream 623026 32687753 ~ 32691484 (+)
LOC111195090 NA coding upstream 664178 32643512 ~ 32650332 (+)
synj1 NA coding downstream 543745 33858676 ~ 33905991 (+)
c20h21orf59 c10h21orf59,cunh21orf59,LOC103033817,LOC107691672,LOC105907446 coding downstream 596293 33911224 ~ 33918741 (+)
mis18a NA coding downstream 646025 33960956 ~ 33967651 (+)
LOC103026520 LOC108423747 coding downstream 693990 34008921 ~ 34123671 (+)
LOC103024324 kl coding downstream 1198307 34513238 ~ 34530693 (+)
G180726 NA non-coding upstream 31469 33281657 ~ 33283041 (+)
G180722 NA non-coding upstream 33583 33253282 ~ 33280927 (+)
G180710 NA non-coding upstream 207707 33106586 ~ 33106803 (+)
G180708 NA non-coding upstream 207976 33106183 ~ 33106534 (+)
G180698 NA non-coding upstream 255468 33057950 ~ 33059042 (+)
G180746 NA non-coding downstream 58643 33373574 ~ 33395329 (+)
G180804 NA non-coding downstream 151639 33466570 ~ 33466780 (+)
G180807 NA non-coding downstream 199591 33514522 ~ 33539422 (+)
G180826 NA non-coding downstream 283417 33598348 ~ 33599355 (+)
G180894 NA non-coding downstream 490306 33805237 ~ 33847775 (+)
ufm1 ufm1,LOC107701138 other upstream 246578 33050242 ~ 33067932 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other upstream 1040712 32264998 ~ 32273798 (+)
G180266 NA other upstream 1880601 31433198 ~ 31433909 (+)
G180235 erg other upstream 2163415 31139344 ~ 31151095 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 5789069 27524302 ~ 27525441 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 857993 34172924 ~ 34328970 (+)
LOC103024954 LOC108423745 other downstream 1019645 34334576 ~ 34507324 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other downstream 2077590 35392521 ~ 35403624 (+)
LOC107197592 NA other downstream 2285552 35600483 ~ 35607593 (+)
LOC103044041 NA other downstream 2370073 35685004 ~ 35702995 (+)

Expression


Co-expression Network