G180746


Basic Information

Item Value
gene id G180746
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33373574 ~ 33395329 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244804
ATAGTGTTTGGACCACTTTTATAGGCAACCTGCATAGCTGgctaaaacagtttaaaatactattaaaggtttaaattaagttaataatagaaaataaataatcagttcTGGATTCACTACTGACACCATGAAACATCTGCCAAGACAAGTCCACATTTGTCTTGAATCAGAGTTCATTGTGAAACAAACAATTGTCAAACAAGAAGGTCTGTGTGTTCACACAACAGTAAAACGATTAAAAACGGACAaatgtaaaacttaaaataggGATGAGATTAGTCGTTTTAGACTAGATGTCAGTTCCGTGGGAATCCCCAACGGAAGCGGGCCTTCCTCTATCTCCAAAACGCCTGAAGAAGGAGACCAGGGCTGAAGGTTCGTGCCTTTTGGAGGGTGGAGGCTCTTGTGCATTTCGTCGGTGAAAGAGAACCCCCAAATGGAAGCCGGGGGCGGAGTCCTGGGCTTCTGAACCCAGAGAGGCAGATCTTAACATCGGGGCTCCAGAGGGACAGTCCGAGAACTGAGAGGATCCTACACCTGCTTCCGTCAGCACGGAGGTGGACAGGCTGTGCTCGTATGACCTGCACATGTTTGCTAGTAGAGGCGGTTTATGACGTACAGGGGTGTCCGGGAGAGCCCACACACCGTCATCTAGTTCCTCGTCCCTGGCGGCTGGGGTGAAGCAGTGTCTGCGGTGGGGAGTGTTTCTGGGGGTCACTTGAGGGCTGAGGACGGTCCAGGGTGAGCCCATGCACTCAGGATTGTTGTTCAAGAACAGATCCTCATCCCGCGTCTCTCTTTGTGCAGGAGACCAGATAACGGTTGTGTCTTCAAGGTGTTCTGGAGCAGGTTCCCCGTTTAAACTGCCGCAGCTCGTCTGGTAACGCAGAACCTTGCGAGATGCTTCAGACACAGATGTCTCTTTCTGCTGTGTCTCTTGGTTGTCGATGTCCTTGTCGTAATCACACTCAGAATCAACAGGGTCTTGCTTTATAAGGACGCTCCTGCGGCTGCCAGCCTTGCGCACATTGCTTTTAGGAGTCTGATAGTCCACAACAACAATGGGCTTGATCTCCTCTttagtctgaaagctctggtcTGGATTCTGGTCTGGTTGTTCAATATCTAAAACCCCAGAATTCTTCTCTGTCTTGGCAGGACTCTCCACAGCTATCTGGGAAGTCTCCACCAGGGGGTTTAACAGTTCTGTGGGTCTTTCCCTGTTAGAAGGCTGCCTCCTGCGTGCTGGACGGTCAGAAAGGAAGCTGGTCAAAACGGACTCCAACGCCGAGACCGCGGAATCAGACTCGCGGCCAGAGCAGGTGGTGATGGAGCGGCGCTTGGATGCACGGCTAactgcctccctctctctctgctgctgctgacgcTTCTCCGCAGCCTCCCGCTCACCATTCTCCTTCACAGCTTTATCAAACTTCTCACAGAAGGAGTGGAAGATGGAGCAACACTCCTCCAGCTTAAAGGTAGCAGGATCTTCACAGAAGTACTCTGCCACTGAGTGACTGATGGAGTTCAGCTCCTGCAGAGAAGCCTCCGTGGCTGCAAGTCGACTTTCAGccatCTGCAGAAATTCCTCCATTTGATGTTCCAGATCAGGCTGTTTACTGGCATTGGCCTTTGCTTTTTTAatcttctccatctctctacGAAAATCTGTCTCCACTTCTTGTTTGTGGAttCTTGAAGCGTCTCCGATGTGCCGGAGCTGTTCTGGAAAGTTCAGTAAAGCTCGGTCAATCTGCTGAGCTTGCATAGCCACATAGTGCATTAGATTCATGCCAGGTTTGTTAGCCTTGGTGTCCACTAGTCTCAGCAGGGAAGCCATCCTGAAACCTATTGCACGGCCTGCGTATCCACCAGCATTCATGTAGTTTCCAGCTTTCAGCACCAGTCGAATGATAGAATGAAGATCATCACAAACcagcagctCATTAGCAGCTGCAGTCATAACAGCAATGGAGCTGGTCACCTCTTCCATGAAGGGGCTGAACTCCTCCCTAAGGAGCAGGTGCTTGATTCGTTCTTCATACCCAGGAATTTTGACCAGCATCAACAGAAAGCGGTCAGCCTCTGGCAGCTGGGACATACTGCCACTGAAGGATAAAAGCTTCTTTAACTCCACATCATCAGGTAACAGTTTGGTCAGCTCCTTCAATCTGTCAGCAGCAAAACGCATGTTACCCTGCCTCACATCCTCAATGATGTCTTGCATCGGCattttaaactgcttCAGGAAAATCCCAATATTCATACTTTTCTTTGAGTTGATGATTGAGACCATTTCTGACTCCTGAGTGGTTGACGGAAGGCCCCATATGCACTTCTTGACCGTTCCGACCCTGCGGGGTGCCCGCTGCTGCTCACTGTGACTGAACAGCTCCTCGATGTACCGTGTGTCCAGAGGGAAGTCCTCCTGCTTCTTCAGGGATGTCCACACATTGCGCTTGCCGACGACACTGTGACGGGGGATGGCATCCCAATTAAAGGTGCGCATCCTGGAGCGTCTGTGGACACTGCGAGAGAACGGGTCACCTCCAcatagaggaggaggaggagggggtggCGGTggcggtggaggaggaggagccagggcaggtggtggtggtggtggtggaggtggtctGATGGACACTGAGTCATTCAAAATACAGTGAGATTGATCTGAAGAACGTGCAGGGAGCTGTGGTGGAACTATGACTGTGATGCCATCCATGTGATGGGATGGGTATCAGAAGAATTTCTGATCCAACGAGTTAAAGAAGGGCAGGATCCAGAAGGGCTGCGGCGGAGCAGAGAGAAAGCGGTCAGAGAGCGAAGTGTGGAGAGCTCTGAGTAACATCCATCACCACGGTCAGCGATTAACCCGACAAACGCCATCTCTCATCATCAAGCTGCTTTATCGCCGTGCCCGACCACGCCCCCGGCCACGCCCATGATCACGCCCGTTCATCTCTCACAGCCACTCACCTGAGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244804 True 2996 lncRNA 0.51 12 33373574 33395329

Neighbor

gene id symbol gene type direction distance location
LOC107197579 trim47,LOC108423837,LOC107701143,LOC107718738,LOC107557227,LOC107720633 coding upstream 76379 33286435 ~ 33297195 (+)
LOC103028331 frem2,frem2a,LOC107720635,LOC107701139,LOC108276566,LOC107555183 coding upstream 97888 33109991 ~ 33275686 (+)
LOC103036259 NA coding upstream 664320 32704931 ~ 32709254 (+)
LOC103029275 NA coding upstream 682090 32687753 ~ 32691484 (+)
LOC111195090 NA coding upstream 723242 32643512 ~ 32650332 (+)
synj1 NA coding downstream 463347 33858676 ~ 33905991 (+)
c20h21orf59 c10h21orf59,cunh21orf59,LOC103033817,LOC107691672,LOC105907446 coding downstream 515895 33911224 ~ 33918741 (+)
mis18a NA coding downstream 565627 33960956 ~ 33967651 (+)
LOC103026520 LOC108423747 coding downstream 613592 34008921 ~ 34123671 (+)
LOC103024324 kl coding downstream 1117909 34513238 ~ 34530693 (+)
G180734 NA non-coding upstream 58643 33314510 ~ 33314931 (+)
G180726 NA non-coding upstream 90533 33281657 ~ 33283041 (+)
G180722 NA non-coding upstream 92647 33253282 ~ 33280927 (+)
G180710 NA non-coding upstream 266771 33106586 ~ 33106803 (+)
G180708 NA non-coding upstream 267040 33106183 ~ 33106534 (+)
G180804 NA non-coding downstream 71241 33466570 ~ 33466780 (+)
G180807 NA non-coding downstream 119193 33514522 ~ 33539422 (+)
G180826 NA non-coding downstream 203019 33598348 ~ 33599355 (+)
G180894 NA non-coding downstream 409908 33805237 ~ 33847775 (+)
G180912 NA non-coding downstream 546560 33941889 ~ 33945586 (+)
ufm1 ufm1,LOC107701138 other upstream 305642 33050242 ~ 33067932 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other upstream 1099776 32264998 ~ 32273798 (+)
G180266 NA other upstream 1939665 31433198 ~ 31433909 (+)
G180235 erg other upstream 2222479 31139344 ~ 31151095 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 5848133 27524302 ~ 27525441 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 777595 34172924 ~ 34328970 (+)
LOC103024954 LOC108423745 other downstream 939247 34334576 ~ 34507324 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other downstream 1997192 35392521 ~ 35403624 (+)
LOC107197592 NA other downstream 2205154 35600483 ~ 35607593 (+)
LOC103044041 NA other downstream 2289675 35685004 ~ 35702995 (+)

Expression


Co-expression Network