G180804


Basic Information

Item Value
gene id G180804
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33466570 ~ 33466780 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244884
gtaaaaccactccaaatgatccagaatgcagcagcacgtctggtcttcaaccagccaaaacgggctcatgtcaccccgctgctcattgagctccattggctaccagttgatgctcgcatcaaattcaaaactcttacaatcgcctacaaggtgatacagaacagctccttcctacctgcactgatcactcctgaaggcttacgctacctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244884 True 211 lncRNA 0.50 1 33466570 33466780

Neighbor

gene id symbol gene type direction distance location
LOC107197579 trim47,LOC108423837,LOC107701143,LOC107718738,LOC107557227,LOC107720633 coding upstream 169375 33286435 ~ 33297195 (+)
LOC103028331 frem2,frem2a,LOC107720635,LOC107701139,LOC108276566,LOC107555183 coding upstream 190884 33109991 ~ 33275686 (+)
LOC103036259 NA coding upstream 757316 32704931 ~ 32709254 (+)
LOC103029275 NA coding upstream 775086 32687753 ~ 32691484 (+)
LOC111195090 NA coding upstream 816238 32643512 ~ 32650332 (+)
synj1 NA coding downstream 391896 33858676 ~ 33905991 (+)
c20h21orf59 c10h21orf59,cunh21orf59,LOC103033817,LOC107691672,LOC105907446 coding downstream 444444 33911224 ~ 33918741 (+)
mis18a NA coding downstream 494176 33960956 ~ 33967651 (+)
LOC103026520 LOC108423747 coding downstream 542141 34008921 ~ 34123671 (+)
LOC103024324 kl coding downstream 1046458 34513238 ~ 34530693 (+)
G180746 NA non-coding upstream 71241 33373574 ~ 33395329 (+)
G180734 NA non-coding upstream 151639 33314510 ~ 33314931 (+)
G180726 NA non-coding upstream 183529 33281657 ~ 33283041 (+)
G180722 NA non-coding upstream 185643 33253282 ~ 33280927 (+)
G180710 NA non-coding upstream 359767 33106586 ~ 33106803 (+)
G180807 NA non-coding downstream 47742 33514522 ~ 33539422 (+)
G180826 NA non-coding downstream 131568 33598348 ~ 33599355 (+)
G180894 NA non-coding downstream 338457 33805237 ~ 33847775 (+)
G180912 NA non-coding downstream 475109 33941889 ~ 33945586 (+)
G180913 NA non-coding downstream 478885 33945665 ~ 33948938 (+)
ufm1 ufm1,LOC107701138 other upstream 398638 33050242 ~ 33067932 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other upstream 1192772 32264998 ~ 32273798 (+)
G180266 NA other upstream 2032661 31433198 ~ 31433909 (+)
G180235 erg other upstream 2315475 31139344 ~ 31151095 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 5941129 27524302 ~ 27525441 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 706144 34172924 ~ 34328970 (+)
LOC103024954 LOC108423745 other downstream 867796 34334576 ~ 34507324 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other downstream 1925741 35392521 ~ 35403624 (+)
LOC107197592 NA other downstream 2133703 35600483 ~ 35607593 (+)
LOC103044041 NA other downstream 2218224 35685004 ~ 35702995 (+)

Expression


Co-expression Network