G180843


Basic Information

Item Value
gene id G180843
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33591638 ~ 33612072 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244926
gcagcctggtgttcaatcttcattaattgcacattattgcaccagtaagagcagagtgtgaaggttcaattagcagggtaagagcacagttctgctctaaatattgcaatgcacacaacattatgggtgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggagcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacggtatccagggtaacgtcagcataccaccaagaagaaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaaacataaaaccacggctgatcaaatcacggcataattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaccacaatcaattattgtgctctaaaaccaggtgtttcagtttcattgtcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244926 True 488 lncRNA 0.44 2 33591638 33612072

Neighbor

gene id symbol gene type direction distance location
LOC107197574 arfip2b,LOC108438961,LOC108276920,LOC107557232,LOC107718740,LOC107555180 coding downstream 145523 33399355 ~ 33446115 (-)
LOC103027697 NA coding downstream 196373 33373500 ~ 33395265 (-)
LOC103028027 LOC108423836,LOC107701140,LOC107720632,LOC107557229,LOC107718737 coding downstream 224044 33303815 ~ 33367594 (-)
LOC111195091 NA coding downstream 414141 33176763 ~ 33177497 (-)
LOC103035222 trpc4,LOC108423767 coding downstream 663885 32872810 ~ 32927753 (-)
LOC107197575 NA coding upstream 221873 33833945 ~ 33835554 (-)
eva1c NA coding upstream 309292 33921364 ~ 33935796 (-)
hunk hunk,LOC108423838,LOC107734458,LOC107577711,LOC107691675,LOC104954747 coding upstream 375000 33987072 ~ 34001460 (-)
zar1l NA coding upstream 896387 34508459 ~ 34510759 (-)
rfc3 rfc3,LOC107589808,LOC107728889 coding upstream 921102 34533174 ~ 34540077 (-)
G180785 NA non-coding downstream 273570 33317845 ~ 33318068 (-)
G180778 NA non-coding downstream 308029 33283379 ~ 33283609 (-)
G180709 NA non-coding downstream 485173 33106160 ~ 33106465 (-)
G180707 NA non-coding downstream 504883 33086525 ~ 33086755 (-)
G180687 NA non-coding downstream 555278 33036060 ~ 33036360 (-)
G180889 NA non-coding upstream 151328 33763400 ~ 33763639 (-)
G180893 NA non-coding upstream 182591 33794663 ~ 33794995 (-)
G180949 NA non-coding upstream 227335 33839407 ~ 33886265 (-)
G180957 NA non-coding upstream 269499 33881571 ~ 33910371 (-)
G180965 NA non-coding upstream 273652 33885724 ~ 33923081 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other downstream 1007295 32436325 ~ 32584343 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other downstream 1329040 32240179 ~ 32262598 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other downstream 1519714 31894202 ~ 32071924 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 2633871 30946946 ~ 30957767 (-)
G179816 NA other downstream 4740533 28850690 ~ 28851105 (-)
LOC103033173 NA other upstream 193168 33805240 ~ 33855632 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 1821160 35433232 ~ 35470789 (-)

Expression


Co-expression Network