G180894


Basic Information

Item Value
gene id G180894
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33805237 ~ 33847775 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244978
tttttttcatgtaattaaataatcaaaacTAATGCAGTAATGTGactaatatgttttaaaatgtataagtaTACTTTGTACACCAGGGTTAGGGTTCTTCACACGTCTCAAAAATGACTCATATAAAaccaaaaactgttattttatgtCCTTGCTCAAAGGAAACTTTGTTGCaccatttattataaaaatgtagcTTTAAACATACTTACCCCAGCAGAGCCATTGGAATGAGGCAGATTCCAGCAGCCAGGAGGAAGGCAAAGCCAGGAAACCAGGCCACTGTGCTGCTGTAGACACTGTTAAAAGCTGCACTCGCTAAATTAGTGCTTAGGCTATCAACGAACGCTACCCAAGCGAAGAGAGCTCCTGAAACATgcagagaaaaacaaatattaacttTGCTCCCGAGACCTCATAACTGTTATGTTATTGATCAATACCAACCCCAGTCATGCGATTCActtgtttgggttttttttctgCCCTTTAACAACAGACCCAGCTATTGAAGGGTTTGATCATTAGCtaagttaaaatacattacattacatttggcagacgcttttgtccaaagcgacttacaatagtgaagcacaaaagtaatagaagttaaagataaaaacatctttagacagggactaaaggaggtcaaaggatAATTAtgtgatagaggagtgaaggaggggaagaaggaaatgaggttagaattagttagtgtgttagaggtgttaggagagtaagtgctctttgaagagctctgtcttcaggagtttattaaaaatagtgagagattctcctgatctggaaGTAGTCATCCTCAAGTCTTTTTGTTCATAGTTGAAGTATGGTTTCTTCCTGTGATGCTAATAGGGGCTG
>TU244979
gttagaggtgttaggagagtaagtgctctttgaagagctctgtcttcaggagtttattaaagatagtgagagattctcctgatctggtagtggaaggtagttagttagaggtgttaggagagtaagtgctctttgaagagctctgtcttcaggagtttattaaaaatagtgagagattctcctgatctggaaGTAGTCATCCTCAAGTCTTTTTGTTCATAGTTGAAGTATGGTTTCTTCCTGTGATGCTAATAGGGGCTG
>TU244980
gttagaggtgttaggagagtaagtgctctttgaagagctctgtcttcaggagtttattaaagatagtgagagattctcctgatctggtagtggaaggtagttagttagaggtgttaggagagtaagtgctctttgaagagctctgtcttcaggagtttattaaagatagtgagagattctcctgatctggtagtggaaggtagttagttagaggtgttaggagagtaagtgctctttgaagagctctgtcttcaggagtttattaaaaatagtgagagattctcctgatctggaaGTAGTCATCCTCAAGTCTTTTTGTTCATAGTTGAAGTATGGTTTCTTCCTGTGATGCTAATAGGGGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244978 True 879 lncRNA 0.38 2 33846794 33847775
TU244979 False 261 lncRNA 0.40 2 33805237 33847775
TU244980 False 364 lncRNA 0.40 2 33805237 33847775

Neighbor

gene id symbol gene type direction distance location
LOC107197579 trim47,LOC108423837,LOC107701143,LOC107718738,LOC107557227,LOC107720633 coding upstream 508042 33286435 ~ 33297195 (+)
LOC103028331 frem2,frem2a,LOC107720635,LOC107701139,LOC108276566,LOC107555183 coding upstream 529551 33109991 ~ 33275686 (+)
LOC103036259 NA coding upstream 1095983 32704931 ~ 32709254 (+)
LOC103029275 NA coding upstream 1113753 32687753 ~ 32691484 (+)
LOC111195090 NA coding upstream 1154905 32643512 ~ 32650332 (+)
synj1 NA coding downstream 10901 33858676 ~ 33905991 (+)
c20h21orf59 c10h21orf59,cunh21orf59,LOC103033817,LOC107691672,LOC105907446 coding downstream 63449 33911224 ~ 33918741 (+)
mis18a NA coding downstream 113181 33960956 ~ 33967651 (+)
LOC103026520 LOC108423747 coding downstream 161146 34008921 ~ 34123671 (+)
LOC103024324 kl coding downstream 665463 34513238 ~ 34530693 (+)
G180826 NA non-coding upstream 205882 33598348 ~ 33599355 (+)
G180807 NA non-coding upstream 265815 33514522 ~ 33539422 (+)
G180804 NA non-coding upstream 338457 33466570 ~ 33466780 (+)
G180746 NA non-coding upstream 409908 33373574 ~ 33395329 (+)
G180734 NA non-coding upstream 490306 33314510 ~ 33314931 (+)
G180912 NA non-coding downstream 94114 33941889 ~ 33945586 (+)
G180913 NA non-coding downstream 97890 33945665 ~ 33948938 (+)
G180921 NA non-coding downstream 125169 33972944 ~ 33973145 (+)
G180931 NA non-coding downstream 158188 34005963 ~ 34006814 (+)
G180937 NA non-coding downstream 194843 34042618 ~ 34043415 (+)
ufm1 ufm1,LOC107701138 other upstream 737305 33050242 ~ 33067932 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other upstream 1531439 32264998 ~ 32273798 (+)
G180266 NA other upstream 2371328 31433198 ~ 31433909 (+)
G180235 erg other upstream 2654142 31139344 ~ 31151095 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 6279796 27524302 ~ 27525441 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 325149 34172924 ~ 34328970 (+)
LOC103024954 LOC108423745 other downstream 486801 34334576 ~ 34507324 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other downstream 1544746 35392521 ~ 35403624 (+)
LOC107197592 NA other downstream 1752708 35600483 ~ 35607593 (+)
LOC103044041 NA other downstream 1837229 35685004 ~ 35702995 (+)

Expression


Co-expression Network