G180913


Basic Information

Item Value
gene id G180913
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33945665 ~ 33948938 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU245018
atttttacacatttttcacaaactaatttaaactgctcctaaagtctttgtcagattacctcttatttcgctgtaaatgaacaacagacatatttgatgataattgccaaaggattagttgatcggtaaaacggtgacccaatggcgagcaattgagtcactagagacgcaacactaaaccaaagtgaaaccatgacatggtcagaaaacagattattgaaaattcatgaaacttggcaaaaacacaaaagacatcattacacacattttttgtgtacattgtcaaactactcctagcaaatttgatgaattctcttggtatttggtaaaaataaacattgaacatatctgatgataattgccaaaggattagttgatcggtaaaacggtgacccaatggcgagcaattgagtcactagagacgcaacactaaaccaaagtgaaaccatgacatggtcagaaaacagattattgaaaattcatgaaacttggcaaaaacacaaaagacatcattacacacattttcagcattggtaggactgactccgcccaacaggaagtcggccatattggaatttgtaatatttttacaaatttttcacaaactaatttaaactgctcctaaagtctttgtcagattacctcttatttcgctgtaaatgaacaacagacatatttgatgataattgccaaaggattagttgatcggtaaaacggtgacccaatggcgagcaattgagtcactagagacgcaacactaaaccaaagtgaaaccatgacatggtcagaaaacagattattgaaaattcatgaaacttggcaaaaacacaaaagacatcattacacacattttcagcattggtaggactgactccgcccaacaggaagtcggccatattggaatttgtaatatttttacaaatttttcacaaactaatttaaactgctcctaaagtctttgtcagattacctcttatttcgctgtaaatgaacaacagacatatttgatgataattgccaaaggattagttgatcggtaaaacggtgacccaatggcgagcaattgagtcactagagacgcaacactaaaccaaagtgaaaccatgacacggtcagaaaacagattattgaaaattcatgaaacttggcaaaaacacaaaagacatcattacacacattttcagcattggtaggactgactccgcccaacaggaagtcggccattttgaaatatctgcattttacacacattttttgcata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245018 True 1261 lncRNA 0.36 2 33945665 33948938

Neighbor

gene id symbol gene type direction distance location
c20h21orf59 c10h21orf59,cunh21orf59,LOC103033817,LOC107691672,LOC105907446 coding upstream 26924 33911224 ~ 33918741 (+)
synj1 NA coding upstream 39674 33858676 ~ 33905991 (+)
LOC107197579 trim47,LOC108423837,LOC107701143,LOC107718738,LOC107557227,LOC107720633 coding upstream 648470 33286435 ~ 33297195 (+)
LOC103028331 frem2,frem2a,LOC107720635,LOC107701139,LOC108276566,LOC107555183 coding upstream 669979 33109991 ~ 33275686 (+)
LOC103036259 NA coding upstream 1236411 32704931 ~ 32709254 (+)
mis18a NA coding downstream 12018 33960956 ~ 33967651 (+)
LOC103026520 LOC108423747 coding downstream 59983 34008921 ~ 34123671 (+)
LOC103024324 kl coding downstream 564300 34513238 ~ 34530693 (+)
stard13 stard13,LOC108415386 coding downstream 596825 34545763 ~ 34726721 (+)
nbea nbeaa,nbea,LOC107691681 coding downstream 826776 34775714 ~ 35070323 (+)
G180912 NA non-coding upstream 79 33941889 ~ 33945586 (+)
G180894 NA non-coding upstream 97890 33805237 ~ 33847775 (+)
G180826 NA non-coding upstream 346310 33598348 ~ 33599355 (+)
G180807 NA non-coding upstream 406243 33514522 ~ 33539422 (+)
G180804 NA non-coding upstream 478885 33466570 ~ 33466780 (+)
G180921 NA non-coding downstream 24006 33972944 ~ 33973145 (+)
G180931 NA non-coding downstream 57025 34005963 ~ 34006814 (+)
G180937 NA non-coding downstream 93680 34042618 ~ 34043415 (+)
G180943 NA non-coding downstream 157561 34106499 ~ 34107595 (+)
G181027 NA non-coding downstream 301069 34250007 ~ 34250467 (+)
ufm1 ufm1,LOC107701138 other upstream 877733 33050242 ~ 33067932 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other upstream 1671867 32264998 ~ 32273798 (+)
G180266 NA other upstream 2511756 31433198 ~ 31433909 (+)
G180235 erg other upstream 2794570 31139344 ~ 31151095 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 6420224 27524302 ~ 27525441 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 223986 34172924 ~ 34328970 (+)
LOC103024954 LOC108423745 other downstream 385638 34334576 ~ 34507324 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other downstream 1443583 35392521 ~ 35403624 (+)
LOC107197592 NA other downstream 1651545 35600483 ~ 35607593 (+)
LOC103044041 NA other downstream 1736066 35685004 ~ 35702995 (+)

Expression


Co-expression Network