G180958


Basic Information

Item Value
gene id G180958
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33918934 ~ 33923728 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU245092
gagagagcgccatctacccacccggagggagcagggccaattgtgctccctctgagcgccggcagcttgatggtaaaactgcatgagcgggggttcaaacctgcgacctcctgctcatagtggcagcactttggacctctggaccactctgcgccccttatttaatatttttaataaaagaaaagcattGCAGCAAGCGATGCTGCACATTCAACACTCCTTAACCAACTAAATCTTTCTGCATGTCCTATTCTTTAATATACAGTGTTTGCTTTGCCTTTGCTCGGCTTCCCCAGTTCCCCTTAATTTTTACTTATTAGTGACATTCACAAACATGTCAAATATGTCGTATATCTTAATAACCTTTTTCTGATCGAGATTATCGTAGGAGatcataattattttaattagtttaacaACAATTTACCAAGATCTAACCTTAATATATCCAACATTGTATGTCTCAGGTTGGCAATGTTAACCTGGGACTGAAGTAGAGACTGTTGTTGGAATGTTGGATTTGGTATGAAGTTgttgtgcaaaagtattcataccccttgatcttcttcacattttatcaccttacaaccacaaacctgcatgtattttattgagattttaagtgatagacaaatacaaagtagcacatgaaaataatacatgtttttcgaaattggaaataaaaaatatataaaaggtgTGACGAGtaacccccaaccccccccccccactgcaCTTACAGCTGCACGTCTTTTGGGGTatatctctaccagctttgcacaccTAGAGACTGAGAGTTttgtccattcttctttacaaaataacTCAAgttcagccaggttggatgagctggatggagagcgtctgtgaacagcatttttttatgtcttgccacagaagctcagtgaGATTTAGGTCAAGTCTttaactggatcattctaacacattaatattatttgatctaaatcattccactgtagctctggctgtatgtttagggtcattgtcttgctggaaggtgaatctccttcccagtctcaagtctttttaCAGCCTCaaacaggttttctttcagaattgccctgtatttagctccatccatcgtCTTATCAACTCTGACCTGCttttctgtccctgctgaagaaaagcatccccacagcatgatgctgccaccaccatgtttcacagtagatggtgtgttcagggtgaaaGAGTTCAAGGGCTATGAATACTTTGGCCAGCCACAGTATACCTTTACCCACTGCCCTCCAGAGAAGAGGAGCTGTCTGTAGTTCCAAACGTCCATACCTCTTTTTATTACCATTTAGTAAAGAGGTAACCTAAGGGCCTCAAAAGTGCCCCATCTGCTTAACTAGAACTTCATAACTGAGCCACATCTCTGgataaacatattctgtttgttTCCCCtcctcaaaatgctaaaaacaaCCCCAGACACATGTTCTTGTCTCTGGAGGAAGGTAAAGGTAAGTTATATGGAGCAGAAAGGCGCACCGCTGTTATGTTATGCAATGGAATTAATATTTacgaaataattattttaaaccgTACGCTACAGAGATTGTATTTCACTATTTTcactttaaaaattaattatttattttgcctgGGTCACCCAAACAATTTTATACaactgtgtgtaaatatatgtcATGCAgccaaatgttttataaattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245092 True 1698 lncRNA 0.40 2 33918934 33923728

Neighbor

gene id symbol gene type direction distance location
LOC107197575 NA coding downstream 83380 33833945 ~ 33835554 (-)
LOC103027380 LOC108438972,LOC108277286,LOC107718741,LOC107701146,LOC107555179,LOC105907404,LOC107720538,LOC107693876 coding downstream 172158 33526672 ~ 33746776 (-)
LOC107197574 arfip2b,LOC108438961,LOC108276920,LOC107557232,LOC107718740,LOC107555180 coding downstream 472819 33399355 ~ 33446115 (-)
LOC103027697 NA coding downstream 523669 33373500 ~ 33395265 (-)
LOC103028027 LOC108423836,LOC107701140,LOC107720632,LOC107557229,LOC107718737 coding downstream 551340 33303815 ~ 33367594 (-)
hunk hunk,LOC108423838,LOC107734458,LOC107577711,LOC107691675,LOC104954747 coding upstream 63344 33987072 ~ 34001460 (-)
zar1l NA coding upstream 584731 34508459 ~ 34510759 (-)
rfc3 rfc3,LOC107589808,LOC107728889 coding upstream 609446 34533174 ~ 34540077 (-)
LOC103021309 dclk1,LOC107728871,LOC107577778 coding upstream 1151286 35075014 ~ 35164372 (-)
LOC111195093 NA coding upstream 1246058 35169786 ~ 35180741 (-)
G180957 NA non-coding downstream 8563 33881571 ~ 33910371 (-)
G180949 NA non-coding downstream 32669 33839407 ~ 33886265 (-)
G180893 NA non-coding downstream 123939 33794663 ~ 33794995 (-)
G180889 NA non-coding downstream 155295 33763400 ~ 33763639 (-)
G180832 NA non-coding downstream 256440 33598305 ~ 33662494 (-)
G181005 NA non-coding upstream 182832 34106560 ~ 34107908 (-)
G181011 NA non-coding upstream 219871 34143599 ~ 34143805 (-)
G181030 NA non-coding upstream 330450 34254178 ~ 34254624 (-)
G181136 NA non-coding upstream 618858 34542586 ~ 34542867 (-)
G181252 NA non-coding upstream 990497 34914225 ~ 34945421 (-)
LOC103033173 NA other downstream 63302 33805240 ~ 33855632 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other downstream 1334591 32436325 ~ 32584343 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other downstream 1656336 32240179 ~ 32262598 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other downstream 1847010 31894202 ~ 32071924 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 2961167 30946946 ~ 30957767 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 1509504 35433232 ~ 35470789 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G141641 NA non-coding NC_047603.1 CM018549.1 203141 ~ 203683 (+)