G181045


Basic Information

Item Value
gene id G181045
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 34350884 ~ 34352042 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU245215
gccaagtatatcgttatcgcataaataccctgaaatatcgtgatattattttaaagccatatcgcccacccctactatacAGTGGTACATTGAGGACACCAGACTCAGAACTGGACTGGGATTAAAATAGCTGATACCTGATTCATAAAAATACCTGGATCAGCTTAGGGCGTCCCTAATGGACATTTTAGTAAATGATGAATTATATTTCTGGGGCATTATAATAAAGCATTACTTTTGTCccttttcttacattttcttctttctcaAAATCAAATAATTTGTAACTAAGATAATCATGTTAAAAATCTCTTGCAGCACAAGATAAGGGCATAGCCAACATAACTACAATTTAGCATGAACAATGTGTGGACCTCAAAGAATTATGTTCGAAAAAAATCCCAGAAATGTGGTCAACCAGGGAGAATTCCAGAATTAGAGACTAGCCTAGCTATTAAATAAGTGTGTTTTATGGAGATATTAGTTTTAAGATTAAGAGAGgaggtattttttttactttatgccACCCCATTACAAGTAGTAAGTTATAAgcattaaaaactttAGAAACCTAGCAGGTAATCCAGTCAGTAAAGCGGATAATCTGATTATTATTCATTAGATATAAGATGGCATTACAATATGCCATCAAAAAGTTTTGATAATTGATTTACAGTCGTCTGTCACTGACTGATATTTTTCATTAGATTAACTGGAAAATTCATTTTCAGACGTTATGTATACTTTTGATAGTTCTATTGtggcttttatattgtttaaattgtGCCTCTTTTTTCCATTacatatattaaaaagcctaaatgtataaattgactttttttttttttcaaagaaaacATCATTGTTTGgcaaattttattttgttatttttatttaactgtatattctatattgtaatgtaaatgttcCATACGTATCTTCCATCCTTATTATAGAGTATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245215 True 962 lncRNA 0.31 2 34350884 34352042

Neighbor

gene id symbol gene type direction distance location
LOC103026520 LOC108423747 coding upstream 227213 34008921 ~ 34123671 (+)
mis18a NA coding upstream 383233 33960956 ~ 33967651 (+)
c20h21orf59 c10h21orf59,cunh21orf59,LOC103033817,LOC107691672,LOC105907446 coding upstream 432143 33911224 ~ 33918741 (+)
synj1 NA coding upstream 444893 33858676 ~ 33905991 (+)
LOC107197579 trim47,LOC108423837,LOC107701143,LOC107718738,LOC107557227,LOC107720633 coding upstream 1053689 33286435 ~ 33297195 (+)
LOC103024324 kl coding downstream 161196 34513238 ~ 34530693 (+)
stard13 stard13,LOC108415386 coding downstream 193721 34545763 ~ 34726721 (+)
nbea nbeaa,nbea,LOC107691681 coding downstream 423672 34775714 ~ 35070323 (+)
sertm1 sertm1 coding downstream 870646 35222688 ~ 35232948 (+)
rfxap rfxap coding downstream 881798 35233840 ~ 35239425 (+)
G181034 NA non-coding upstream 28191 34271889 ~ 34322693 (+)
G181033 NA non-coding upstream 82071 34267225 ~ 34268813 (+)
G181027 NA non-coding upstream 100417 34250007 ~ 34250467 (+)
G180943 NA non-coding upstream 243289 34106499 ~ 34107595 (+)
G180937 NA non-coding upstream 307469 34042618 ~ 34043415 (+)
G181056 NA non-coding downstream 60765 34412807 ~ 34415416 (+)
G181057 NA non-coding downstream 71194 34423236 ~ 34424506 (+)
G181135 NA non-coding downstream 190413 34542455 ~ 34542873 (+)
G181137 NA non-coding downstream 191253 34543295 ~ 34543506 (+)
G181144 NA non-coding downstream 199433 34551475 ~ 34624427 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other upstream 21914 34172924 ~ 34328970 (+)
ufm1 ufm1,LOC107701138 other upstream 1282952 33050242 ~ 33067932 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other upstream 2077086 32264998 ~ 32273798 (+)
G180266 NA other upstream 2916975 31433198 ~ 31433909 (+)
G180235 erg other upstream 3199789 31139344 ~ 31151095 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other downstream 1040479 35392521 ~ 35403624 (+)
LOC107197592 NA other downstream 1248441 35600483 ~ 35607593 (+)
LOC103044041 NA other downstream 1332962 35685004 ~ 35702995 (+)
LOC103024766 zdhhc20a,LOC107589301,LOC107743391,LOC107686182,LOC107728865,LOC107697429,LOC108411113,LOC108276908 other downstream 1463993 35816035 ~ 35842871 (+)
G181734 NA other downstream 1854525 36206567 ~ 36209854 (+)

Expression


Co-expression Network