G181305


Basic Information

Item Value
gene id G181305
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35168172 ~ 35169153 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU245516
aatttgaaactaaacaaattttctactcatatcttgagtttaattcattttcttttacattttattaaaaaactaataaaaaaagagtagcactttttaaaagaaatgtaacataagaaaggtaaagggcaaatattaaccatgtaagctgtttatattgcttacaatttaggtgaagcgagcatgtgtaaagcattttaatgtaaaattgcttaattttgctgaattaaaatacgtactatataaataagtaacaaagtaaacgagtaacaaaaatatgaacaccacacaagggttaagagggtaatagaacaattagagccttaacaaactgaactctatcctactataacagttaaacatgaaaaataagactttaagactttttcggtccctgagaatgagaagtttttttctttaataaagatatattattaactttatctgagagaaagatgctccttaaggtaccaaaactataaACATATTTGTCCGCGGCGtcgctacagtgtgctgcaccgtttgtgtagcttagagggagggatcgtccatcctctttttgacttcgaggctcgagaccatgacataatttccatcgatttcgatgaaatatagaaatcatGACACCCCTAATTTTAACCATACTGCTGTCCTACGAGGAAAAGCTGGTGGAACTGACGGATGCTGCAGTACCTTCTGGCAGGAGGAATTGGAGGCCTGAGTGAAGCAGTAATCTCCTTATATGATCTAAGACATCATCAGAAAGTCAAATTTCTGCACTCCTCGTCTCTTAGTGACTCGTATGTAATGTCGTGACTGACTTGAGGGGAAAGAAACAGCAGGGAGTTTTGACAAAGACGTGTGGAACTGAGCGTTCTGTGTATCATGAGTTTGTTTTAATCACCAGCCTCAGCAGGTGTCTGgactttatttagcttttagcttcgACTCAGCAGCTCTCTCAAACTCATGCTGCagagaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245516 True 982 lncRNA 0.36 1 35168172 35169153

Neighbor

gene id symbol gene type direction distance location
LOC103021309 dclk1,LOC107728871,LOC107577778 coding downstream 3800 35075014 ~ 35164372 (-)
rfc3 rfc3,LOC107589808,LOC107728889 coding downstream 628095 34533174 ~ 34540077 (-)
zar1l NA coding downstream 657413 34508459 ~ 34510759 (-)
hunk hunk,LOC108423838,LOC107734458,LOC107577711,LOC107691675,LOC104954747 coding downstream 1166712 33987072 ~ 34001460 (-)
eva1c NA coding downstream 1232376 33921364 ~ 33935796 (-)
LOC111195093 NA coding upstream 633 35169786 ~ 35180741 (-)
spart NA coding upstream 12245 35181398 ~ 35204110 (-)
ccna1 ccna1 coding upstream 36004 35205157 ~ 35210765 (-)
smad9 smad9,LOC107728873 coding upstream 70295 35239448 ~ 35251025 (-)
alg5 alg5,LOC102793295 coding upstream 85621 35254774 ~ 35269308 (-)
G181315 NA non-coding downstream 9346 35156578 ~ 35158826 (-)
G181307 NA non-coding downstream 97863 35068121 ~ 35070309 (-)
G181287 NA non-coding downstream 135708 35027736 ~ 35032464 (-)
G181283 NA non-coding downstream 147578 35018049 ~ 35020594 (-)
G181268 NA non-coding downstream 151516 34956188 ~ 35016656 (-)
G181460 NA non-coding upstream 57366 35226519 ~ 35227227 (-)
G181441 rfxap,sertm1 non-coding upstream 63180 35232333 ~ 35234658 (-)
G181465 NA non-coding upstream 114261 35283414 ~ 35316181 (-)
G181466 NA non-coding upstream 121441 35290594 ~ 35351206 (-)
G181479 NA non-coding upstream 230025 35399178 ~ 35402926 (-)
LOC103033173 NA other downstream 1312540 33805240 ~ 33855632 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other downstream 2583829 32436325 ~ 32584343 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other downstream 2905574 32240179 ~ 32262598 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other downstream 3096248 31894202 ~ 32071924 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 4210405 30946946 ~ 30957767 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 264079 35433232 ~ 35470789 (-)

Expression


Co-expression Network