G181307


Basic Information

Item Value
gene id G181307
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35068121 ~ 35070309 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU245518
GGTTTTATTGTAAATACGACAAAAAggaaacaattttattttacagttattgATCTTTATATATTGGCATGaagtaatatttaaacatttgaagAGAGACCTCCTGTGAGGTTCTGGCTTATTCAAGTTGCAGCAAATGCATGAAACAGCAGATGGGGAGCCAAGTTCATCAGGTAAGATTTGTACTCTAAATAAAACGTCCTTCTTTGACTTTTTCCACCAATAACTGTACCTCTCCTCTCTGCAAACGatacacaaaataataaattaaattaacatatgCAAATGATCAAATCCAccacacaaaataaaagaacgaaaataattagcaaaatgtacaaattaaaGCGAATGTACAGTACTAACCACTCACCTAAATCACAGACAGATCTGCCTCTGTCTCAGTCATATGCACACACCCAGCCAAGCACCAGGCAAAAATCAACAAATCAAACTCTTTGcataatttattattcatttttatgtaaCTTCCAACTGACCTGTATCATTTACATCTttgcgagaaaaaaaaaaaaagagaatacatTAGATTTTTCGTATCGTTACGTAGATCAAAAAATATCGTTTTTCTTGTGGATTGGATGTGGACGAgggagaggagaaaagaaacaGCATCATATTTAAGTGTATAATCTTCTCTAAACAGCTTAATACTCGTATAAACCAAGCTTCCCCTCCTCAAAAGCTATACGATtttgatttataataataataattctctcCTGGCTACAAAGTTATGATATTGCTTACTGTGGTTGTGGTTGTACAACATAATCATCACACATGAATTTAATATTGATCAAATACAACAAACATCGATGCACAACTCATACAATGTAGGAGGGAAATGGGTCTAAATGTGGCTGTTGATCGAAAAATAAAATCGTTACACTGATAATAAATTATGGCATGTTATTGGTGCAAAGTGCCATTACAAAAAACTtcaacattaatttttttttgatcaTAAATAATGCGCaaacgtgtgtgtatgtgtgtgtgtgtgtgagagtgtgtgagagagggttacttttcttttaacttttttttgttcttcactCCTTTAAAGTCCCTCTTTTACATGCCTGTCTGCCCTAGCCATCACATTATGTACATATATGACAAAACAGTTACCAAATATACAAAGAGGAAAACAAAGCCTGTTTTCTGATCATCAGGACCTCATCTCCAGTGCACTGGCCGCACGCATCTCACGTCACCACCGCCatcattatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcgctgTCATCGTTATCTTTGTATGCGTcgtcatgtttttattaatacacattattttacatacagcAGGTCTATAGTAAAGTAAAGGTGATTGGATCATCCATGGCGGcgttgggtgggtgggtgggtgggtcgGGGGGGTTCTCTCCTCAGAGTGAAGACCTGCTGGGCTGTGGTGAGGACACGTTTCATATTTACAGAGACTACCTACGCTCAGCCCGCGGCCCCAGGCTCTCCAGGCTCTCCTACCCCACCAACTAAAAGCAGAGGAAAGCagcagtggtggtggtggtggttgagTTCAGTGCTGTTCGGTggtcggtcggtcggtcggtTCAGAGTCTCTGAGGGGAACTGCAGTCTGAGGCTCGCTCTGCTCAGTCTGTGGTGGTGCTCAGGGTGGGCTGTGGGCGTGtttatatgttaatatgttcaCAGTTTGCAAAAGAGGATTTCAGGCAACCTATGTGGTACGGGaagaaaataaccaaaaacaacaaacaagaaaaaaaacccaaaaaaaacagaaagtccTAAAGATCTAAGTTACAACAGAGATATAAGTCTTATTTTCAGTGTGATTTCTCTCGCTCTGACGATCCGCTCTATTCCAGAACTCGCTCGACTCGCTCTGCGGTTCCACAAACCTCTCTGACGGACTGGTGGAGCGTGAGTCAGTAGGAATACTCCCGGCTGATTCTGTGGCCAGCAGGCTGTAGACTAGCCCTTCTCtgtcctcctgctcctcctctctctgtgtctgctcTCAGTATCTGTTCTGGTGCTCATAGTGCCAGCGGTTAAAATCAATGTTGAACGCCACAATGCTGCCCGATGCCATTCCAGTGATTAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245518 True 2169 lncRNA 0.40 2 35068121 35070309

Neighbor

gene id symbol gene type direction distance location
rfc3 rfc3,LOC107589808,LOC107728889 coding downstream 528044 34533174 ~ 34540077 (-)
zar1l NA coding downstream 557362 34508459 ~ 34510759 (-)
hunk hunk,LOC108423838,LOC107734458,LOC107577711,LOC107691675,LOC104954747 coding downstream 1066661 33987072 ~ 34001460 (-)
eva1c NA coding downstream 1132325 33921364 ~ 33935796 (-)
LOC107197575 NA coding downstream 1232567 33833945 ~ 33835554 (-)
LOC103021309 dclk1,LOC107728871,LOC107577778 coding upstream 4705 35075014 ~ 35164372 (-)
LOC111195093 NA coding upstream 99477 35169786 ~ 35180741 (-)
spart NA coding upstream 111089 35181398 ~ 35204110 (-)
ccna1 ccna1 coding upstream 134848 35205157 ~ 35210765 (-)
smad9 smad9,LOC107728873 coding upstream 169139 35239448 ~ 35251025 (-)
G181287 NA non-coding downstream 35657 35027736 ~ 35032464 (-)
G181283 NA non-coding downstream 47527 35018049 ~ 35020594 (-)
G181268 NA non-coding downstream 51465 34956188 ~ 35016656 (-)
G181252 NA non-coding downstream 122700 34914225 ~ 34945421 (-)
G181136 NA non-coding downstream 525254 34542586 ~ 34542867 (-)
G181315 NA non-coding upstream 86269 35156578 ~ 35158826 (-)
G181305 NA non-coding upstream 97863 35168172 ~ 35169153 (-)
G181460 NA non-coding upstream 156210 35226519 ~ 35227227 (-)
G181441 rfxap,sertm1 non-coding upstream 162024 35232333 ~ 35234658 (-)
G181465 NA non-coding upstream 213105 35283414 ~ 35316181 (-)
LOC103033173 NA other downstream 1212489 33805240 ~ 33855632 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other downstream 2483778 32436325 ~ 32584343 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other downstream 2805523 32240179 ~ 32262598 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other downstream 2996197 31894202 ~ 32071924 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 4110354 30946946 ~ 30957767 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 362923 35433232 ~ 35470789 (-)

Expression


Co-expression Network