G181408


Basic Information

Item Value
gene id G181408
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35470705 ~ 35471932 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU245647
taaaaaaaaaatcttggcaACATTTCAGaccaaaaaaaacccaaaaaacaaaaaacgaatAGCAGCCTAAATAAACAGCACCACCcagTGCCCTCACCTGTACTGCCCTGTTTCAGAGCTGGGCTACTTCTCATAGTTAGTTACTCTTctcataaaatataaactcatacCCCCATCATGTAGATCATGTGACCACCACTTATATAACTTAAAGTGGAAAACTGTTTCAGGGGTCCAGTGGGGTATAAACGTGCCCATAAGCAGCATCACAGCTTTACATCGAGTAAGTACACTACTAAGATGATAAGTCAGGTTTTTATCCtctgagaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245647 True 334 lncRNA 0.39 2 35470705 35471932

Neighbor

gene id symbol gene type direction distance location
LOC111195094 NA coding upstream 106953 35359733 ~ 35363752 (+)
exosc8 exosc8,LOC107577834,LOC107697412 coding upstream 194078 35270958 ~ 35276627 (+)
rfxap rfxap coding upstream 231280 35233840 ~ 35239425 (+)
sertm1 sertm1 coding upstream 237757 35222688 ~ 35232948 (+)
nbea nbeaa,nbea,LOC107691681 coding upstream 400382 34775714 ~ 35070323 (+)
styxl1 NA coding downstream 16670 35488602 ~ 35495295 (+)
LOC103023179 tmem120a,LOC108276692,LOC107728827,LOC107579123 coding downstream 26394 35498326 ~ 35504763 (+)
LOC103023494 LOC107577900,LOC108442441 coding downstream 46239 35518171 ~ 35541791 (+)
LOC103043521 adgrg2 coding downstream 85996 35557928 ~ 35596246 (+)
LOC103023820 NA coding downstream 135840 35607772 ~ 35618274 (+)
G181390 NA non-coding upstream 60341 35408580 ~ 35410364 (+)
G181372 NA non-coding upstream 145541 35324910 ~ 35325164 (+)
G181351 NA non-coding upstream 154378 35283550 ~ 35316327 (+)
G181345 alg5,LOC102793295 non-coding upstream 201422 35254934 ~ 35269283 (+)
G181331 NA non-coding upstream 238687 35201816 ~ 35232018 (+)
G181413 NA non-coding downstream 10354 35482286 ~ 35482622 (+)
G181415 NA non-coding downstream 12169 35484101 ~ 35488468 (+)
G181424 NA non-coding downstream 70416 35542348 ~ 35544216 (+)
G181439 NA non-coding downstream 158239 35630171 ~ 35631951 (+)
G181556 NA non-coding downstream 315169 35787101 ~ 35792691 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other upstream 67081 35392521 ~ 35403624 (+)
LOC103024954 LOC108423745 other upstream 963381 34334576 ~ 34507324 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other upstream 1141735 34172924 ~ 34328970 (+)
ufm1 ufm1,LOC107701138 other upstream 2402773 33050242 ~ 33067932 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other upstream 3196907 32264998 ~ 32273798 (+)
LOC107197592 NA other downstream 128551 35600483 ~ 35607593 (+)
LOC103044041 NA other downstream 213072 35685004 ~ 35702995 (+)
LOC103024766 zdhhc20a,LOC107589301,LOC107743391,LOC107686182,LOC107728865,LOC107697429,LOC108411113,LOC108276908 other downstream 344103 35816035 ~ 35842871 (+)
G181734 NA other downstream 734635 36206567 ~ 36209854 (+)

Expression


Co-expression Network