G181439


Basic Information

Item Value
gene id G181439
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35630171 ~ 35631951 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU245706
TTAATTGAAGCATAAGCAGCATCCAgactaatatttatataatatataacagttAACAGTTTTGAATCAATGCCTCCaccagcggcagcagcagcattagcttagcacaggctagcgcccagCCACGGCAcactcgcccgcagcgctggctcatcttttgtggaaaaaagacaaagaaaatcaACGGCCAATCCCGTCTGACAggcagaacgctaaccagccaggctaggctaggctaagctaagctaagctaatgctgagctaaagcaagctacgctaacctaaccacagtccagccggctagatAATCAATAACACCCagtaaaacaagcagaaatgcttaaaaacgcacagctttcacctgaagacgactccacagagcaggagaggagagtattagcgttatttcatgatcctaatgttaccatcttcacttattcccaatttagaTTTTACATTCTGTATAAACTATTCGCGTttcatagttaaattacagttctgttaccGTTGTTGTAGAACTACTTTTTTGCGGAAGGaacttcaatttattttctttattcgttttgtaaaaaaacacttgagGTTGTGTTTTATCacgaccaaatcacagccgtgatgttattcgtgataacacactccctctcgtgttctattgcttcaataaagtatatgatttatttttcaccTTTAAAAAACGATTCTcttgtaaaagtaaaatgtaaaagtaacatTATTTAATGCCGATCTAccatgtttaattaacatttccTAAGCAGTGTTAATTATGTATTACCTCAGTatgtcttattcatggtaactaatgcattaattcaagttagttagtcaacacttaatgtaaagtgttaccgagtgttgtaaataaattatgtgTAATATTACTTTATCCTTAAAAAACTTGAAAGTTTCACTCTACTGCAGGAAACTAAAGCCAGGGTTACATTACACTATTTTTGGCCTGATTTTTtcaactcaCCAGTGTATTCTGGTCAGGAACTCAGTAGCCAGTAAAATCTGTCAATGAAATATTTGGACActgatttttctttctcttcctgccgtattatatttacatttcaagCTCAATTatgtttaaaccttttttttgctAACATTGTACAAAGCCTTTTATTTGAcagcttattttagttttattttccaccttaaccctttcagtcCTGACATCTGTTACTGCAGCACAAACAATGATAGCTGCAAGCTGTTAGGCTTTAATATGAGGCAAAACCAAAATCTGTCACAACAGACTGATGAATAAACTTACACTGGAGTTATTTCTCTCCTATATTTAGCCATGATAATTTCCCAGTAGCTTGAATTccattgaattatttatttcataaataatTTCCTCCATCACTGGATAAACACGCACATGCATCCTCTAAATCTAAACCATCAAGAAGCCTGACAACTGCATCCAttcaaactttcacaaatgcaGCACTGTGGGGCAGCTAACAGACACCCACACTGACCCATTGTTTTCTTCTAGAACACAGCACACCGTTTGTTCAATTGATTTAATGTTTGATATGAAACATTCTGTAGTTATCTTGTATCCATACACTTGTAAACATCAATATACATTCACATCTCCCTGTACAGATTTCACCTACACataacatgtatttttatttgtaatttgtgatTTGTGAGTATTTTGTTGATGTActataatattttgtgtattgaTTCTGTTGATAacaactatat

Function

GO:

id name namespace
GO:0051090 regulation of DNA-binding transcription factor activity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245706 True 1752 lncRNA 0.36 2 35630171 35631951

Neighbor

gene id symbol gene type direction distance location
LOC111194993 NA coding upstream 709 35622099 ~ 35629462 (+)
LOC103023820 NA coding upstream 11897 35607772 ~ 35618274 (+)
LOC103043521 adgrg2 coding upstream 33925 35557928 ~ 35596246 (+)
LOC103023494 LOC107577900,LOC108442441 coding upstream 88380 35518171 ~ 35541791 (+)
LOC103023179 tmem120a,LOC108276692,LOC107728827,LOC107579123 coding upstream 125408 35498326 ~ 35504763 (+)
LOC103024448 LOC108413536 coding downstream 105014 35736965 ~ 35789237 (+)
LOC103047081 LOC103047081,LOC108411574,LOC107589340,LOC100004523,LOC107697431,LOC107686183,LOC107578020 coding downstream 343526 35975477 ~ 36166303 (+)
G181424 NA non-coding upstream 85955 35542348 ~ 35544216 (+)
G181415 NA non-coding upstream 141703 35484101 ~ 35488468 (+)
G181413 NA non-coding upstream 147549 35482286 ~ 35482622 (+)
G181408 NA non-coding upstream 158239 35470705 ~ 35471932 (+)
G181390 NA non-coding upstream 219807 35408580 ~ 35410364 (+)
G181556 NA non-coding downstream 155150 35787101 ~ 35792691 (+)
G181586 NA non-coding downstream 229250 35861201 ~ 35901409 (+)
G181605 NA non-coding downstream 289794 35921745 ~ 35922340 (+)
G181614 NA non-coding downstream 354114 35986065 ~ 35989603 (+)
G181615 NA non-coding downstream 369728 36001679 ~ 36002625 (+)
LOC107197592 NA other upstream 22578 35600483 ~ 35607593 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other upstream 226547 35392521 ~ 35403624 (+)
LOC103024954 LOC108423745 other upstream 1122847 34334576 ~ 34507324 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other upstream 1301201 34172924 ~ 34328970 (+)
ufm1 ufm1,LOC107701138 other upstream 2562239 33050242 ~ 33067932 (+)
LOC103044041 NA other downstream 53053 35685004 ~ 35702995 (+)
LOC103024766 zdhhc20a,LOC107589301,LOC107743391,LOC107686182,LOC107728865,LOC107697429,LOC108411113,LOC108276908 other downstream 184084 35816035 ~ 35842871 (+)
G181734 NA other downstream 574616 36206567 ~ 36209854 (+)

Expression


Co-expression Network