G181441 (rfxap,sertm1)


Basic Information

Item Value
gene id G181441
gene name rfxap,sertm1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35232333 ~ 35234658 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU245711
CCGGAGGACATGGCCTGGtcgctcttcttcttcttgtactTGTCTTTGTACATTTTGTTGCGGTGTTTTTTGCACATCCACGGTTTCCTCTGCTTGGCCACCTGCTTGGTGGTCTCCGTGCAGCCTACATACACGCACTTCTTGGGCGCGTTCTCTCCGCCCAGCGCCTCGTCCTCCATGGTCTCTGCGGGGCTCTCTCCGCTCTCTCGCGGCTCCGGCGCGTCCAAGGCGTCGCTCTCCTCTCCCGGATCATCCGCGTCGTAGGAGTACAGCGTGTCGACGGCGCTCAGCGAGCCGCTCTTCTCGCCCGCGAGAGAGCCCGGAGCTTCGGTACCGCCCGCAGCGGGAGCCGTCGCCTCAGACTCACTCATACCGGGTTTcggtgaataaataaataactatattAATAAAACTGCGCGATAGATAAATAAACTCGACCGTGTGAACCGGAGCCCCCCGCTCTCTGTGGGGTGGGGGCTGGTCACcgttagctagctttagcttagctagccTGACCCTCATAGAAATGAACTCGACACGCTGGCGGAACACACGCAGGAGAGTGAAGATACTGTAGATCTCTGTGAGGACAGGCTGCAGATTTCCATATTAGTGAAGGAGCTTCCTGCCTCACTGCTGCACTCTGGATATGACGAGCTTGAGGAGATGATGTTCTTCAGCCTGTGTAAGGCGATGATGAGGAGGGTCAGGAGAAAGAACAGCAGGCTAAGGAATATAGACACGTAGATGTAGACGCTCTCTGTGCGGGAAGACGAGGCCGCAGCGGCCCCTGTGGACAGAGACGTGGGGCTGAACCTCAGAAAGCTCTGTCCCTCCAGATCTGTTCCATTCAGATCTTCCACTTGACCACCGATTCCAGACATAGCAGAGTGTAGAGAGCCTGCACAAAGACACGAGGACAGTTTACACACTCACAGACTGTTTGCTTGTGCATCGATgggacagaaaaaaat

Function

symbol description
rfxap Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in MHC class II deficiency. Orthologous to human RFXAP (regulatory factor X associated protein).
sertm1 Located in intracellular membrane-bounded organelle.

NR:

description
PREDICTED: regulatory factor X-associated protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245711 True 974 lncRNA 0.55 2 35232333 35234658

Neighbor

gene id symbol gene type direction distance location
ccna1 ccna1 coding downstream 21568 35205157 ~ 35210765 (-)
spart NA coding downstream 28223 35181398 ~ 35204110 (-)
LOC111195093 NA coding downstream 51592 35169786 ~ 35180741 (-)
LOC103021309 dclk1,LOC107728871,LOC107577778 coding downstream 67961 35075014 ~ 35164372 (-)
rfc3 rfc3,LOC107589808,LOC107728889 coding downstream 692256 34533174 ~ 34540077 (-)
smad9 smad9,LOC107728873 coding upstream 4790 35239448 ~ 35251025 (-)
alg5 alg5,LOC102793295 coding upstream 20116 35254774 ~ 35269308 (-)
supt20h supt20h coding upstream 41882 35276540 ~ 35303385 (-)
c20h21orf91 cunh21orf91 coding upstream 74341 35308999 ~ 35349619 (-)
ripk4 ripk4,LOC107577855 coding upstream 131627 35366285 ~ 35394225 (-)
G181460 NA non-coding downstream 5106 35226519 ~ 35227227 (-)
G181305 NA non-coding downstream 63180 35168172 ~ 35169153 (-)
G181315 NA non-coding downstream 73507 35156578 ~ 35158826 (-)
G181307 NA non-coding downstream 162024 35068121 ~ 35070309 (-)
G181287 NA non-coding downstream 199869 35027736 ~ 35032464 (-)
G181465 NA non-coding upstream 48756 35283414 ~ 35316181 (-)
G181466 NA non-coding upstream 55936 35290594 ~ 35351206 (-)
G181479 NA non-coding upstream 164520 35399178 ~ 35402926 (-)
G181480 NA non-coding upstream 175761 35410419 ~ 35450392 (-)
G181489 NA non-coding upstream 229606 35464264 ~ 35533212 (-)
LOC103033173 NA other downstream 1376701 33805240 ~ 33855632 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other downstream 2647990 32436325 ~ 32584343 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other downstream 2969735 32240179 ~ 32262598 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other downstream 3160409 31894202 ~ 32071924 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 4274566 30946946 ~ 30957767 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 198574 35433232 ~ 35470789 (-)

Expression


Co-expression Network