G181540


Basic Information

Item Value
gene id G181540
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35617882 ~ 35625755 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU245831
CTGGGACCTTCCCCAACTTTCCACAGCAGATGTACTTCCTCCACATCCTTTTAAATTCTTCCTTTGTTGCACAGCGGAACACAAAGATGAAAAAAACCTTGCAGTGAATTGCAGATGGTAAACAGGTACATGGAGACCAAATGAACAGATTTCcagacaaaaaacaaaccaaaggcCCAGGTGAGACCCAGCAGAACAGCGAGAGCCGTCACGCTCCAGACGTCCTGCAGCGAGGTCCTGCCGCGTTCACGGTGTGGATTACTCCTCTTAATACGACACAGAAGCACCATCACCACTATAAACATGGTGAAGTTCAGCGCATACGTAACGCAGAAATATACCACCACCACAGTGCGGATGCTACCCTGGTCTGTCCACCAGCAGCTGTGTGGGGAAAGAAGTTTACATATAAGATgtgacatatatttttttctatttaaataatcaattgATGTAACATCAAT
>TU245833
CTGGGACCTTCCCCAACTTTCCACAGCAGATGTACTTCCTCCACATCCTTTTAAATTCTTCCTTTGTTGCACAGCGGAACACAAAGATGAAAAAAACCTTGCAGTGAATTGCAGATGGTAAACAGGTACATGGAGACCAAATGAACAGATTTCcagacaaaaaacaaaccaaaggcCCAGGTGAGACCCAGCAGAACAGCGAGAGCCGTCACGCTCCAGACGTCCTGCAGCGAGGTCCTGCCGCGTTCACGGTGTGGATTACTCCTCTTAATACGACACAGAAGCACCATCACCACTATAAACATGGTGAAGTTCAGCGCATACGTAACGCAGAAATATACCACCACCACAGTGCGGATGCTACCCTGGTCTGTCCACCAGCAGCTGTGTGGGGAAAGAAGTTTACATATAAGATgtgacatatatttttttctatttaaataatcaattgATGTAACATCAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245831 True 464 lncRNA 0.45 2 35617882 35625755
TU245833 False 464 lncRNA 0.45 3 35617882 35625755

Neighbor

gene id symbol gene type direction distance location
rhbdd2 NA coding downstream 65694 35542319 ~ 35552188 (-)
prr11 NA coding downstream 129377 35480295 ~ 35488505 (-)
smg8 smg8,LOC107686170,LOC107589184,LOC107577889 coding downstream 140110 35472086 ~ 35477772 (-)
pom121c pom121c coding downstream 199371 35404754 ~ 35418511 (-)
ripk4 ripk4,LOC107577855 coding downstream 223657 35366285 ~ 35394225 (-)
LOC103044945 gabrr3,gabrr3a,LOC107589257,LOC107697425,LOC107686176,LOC106603079,LOC106563567 coding upstream 12250 35638005 ~ 35674164 (-)
LOC103045257 LOC108411116 coding upstream 180977 35806732 ~ 35810671 (-)
smg6 NA coding upstream 220635 35846390 ~ 35873586 (-)
ovca2 ovca2 coding upstream 279929 35905684 ~ 35942719 (-)
LOC111194994 atp6v0a1,LOC108444241,LOC107567567 coding upstream 620618 36246373 ~ 36253870 (-)
G181533 NA non-coding downstream 9896 35606892 ~ 35607986 (-)
G181529 NA non-coding downstream 19117 35598524 ~ 35598765 (-)
G181519 NA non-coding downstream 43498 35573930 ~ 35574384 (-)
G181510 pora,LOC108442441,LOC107577900,LOC107589225 non-coding downstream 81114 35535736 ~ 35536768 (-)
G181489 NA non-coding downstream 84670 35464264 ~ 35533212 (-)
G181543 NA non-coding upstream 5278 35631033 ~ 35632055 (-)
G181660 NA non-coding upstream 119030 35744785 ~ 35792922 (-)
G181675 NA non-coding upstream 154226 35779981 ~ 35780520 (-)
G181680 NA non-coding upstream 164461 35790216 ~ 35792109 (-)
G181686 NA non-coding upstream 172962 35798717 ~ 35827096 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other downstream 147093 35433232 ~ 35470789 (-)
LOC103033173 NA other downstream 1762250 33805240 ~ 33855632 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other downstream 3033539 32436325 ~ 32584343 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other downstream 3355284 32240179 ~ 32262598 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other downstream 3545958 31894202 ~ 32071924 (-)

Expression


Co-expression Network