G181556


Basic Information

Item Value
gene id G181556
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35787101 ~ 35792691 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU245867
ttttagactctttggcctgtttttctgcgctagaaatgcgcactctctccacttttagactctttggcctgtttttctgcgctagaaatgcgcactctctccgcttttagactttttggcccgtttttgtgcactagaaatgcgccatctctccacttttagactctttggcccgtttttctgcgctagaaatgcgcacattctccgcttttagactctttggcccgtttttgtgcactagaaatgcgcactctctccacttttagactctttggcctgtttttctgcgctagaaatgcgcacattctccgcttttagactctttggccgtttttctgcgctagaaatgcgcactctctccacttttagactctttggcctgtttttctgccgctagaaatgcgcactctctccacttttagactctttggcctgtttttctgcgctagaaatgcgcactctctctgcttttagactctttggcccgtttctgacacctagcgttcaaactttgaatctcacattataaaaacctgcttaacagcgggccaactttcattctattttctaaaatacctcgcgggccgctccaaaaaaggatacgggctgcaaatggcccgcgggccgtagtttggacacccctgctataaGGGCTAAACAGATGTGTCTGCCAGCAATGTGTTGGCAAAGATGAATTATTACAACACTGTAGTTTGACAGCAGCAGCCTGAAGGAGTGTGCTGGATTACTGACAGCTCAGTGTCTGCTTTAATCTCAGAGCAGTGTGATTTAATTCATACACAAAACTATAAAAGACATTTAGAGGAAATTCCAGGATTTTAGtgcatttcaggggtggtctcttctgaaaatttgattttcaatttgatcattttagtcatatatttatt
>TU245868
ttttagactctttggcctgtttttctgcgctagaaatgcgcactctctccacttttagactctttggcctgtttttctgcgctagaaatgcgcactctctccgcttttagactttttggcctgtttttctgcgctagaaatgcgcacattctccgcttttagactctttggcccgtttttgtgcactagaaatgcgcactctctccacttttagactctttgcctgttttt
>TU245869
aaatatatttgaagtcacgggccacagactctgtaataaaacaaataatgaaatataccactttaaataatacattttcctgattatttcatttacacactattttacttgacttactatctttatctttgacagtgttgtgtaaactaagatttttcaaattgatgtttaatttcatgatgtctcttaatattaaactccttaattacggcaacttttagactctttggcctgtttttctgcgctagaaatgcgcactctctccgcttttagactctttggcccgtttttctgcgctagaaatgcgcactctctccgcttttagactctttggcccgtttttctgcactagaaatgcgcactctctccgcttttagactctttggcctgtttttctgcgctagaaatgcgcactctctccgcttttagactctttggcccgtttttctgcgctagaaatgcgcactctctccgcttttagactctttggcccgtttttctgcactagaaatgcgcactctctccgcttttagactctttggcctgtttttctgcgctagaaatgcgcactctctccgcttttagactctttggcccgtttctgacacctagcgttcaaactttgaatctcacattataaaaacctgcttaacagcgggccaactttcattctattttctaaaatacctcgcgggccgctccaaaaaaggatacgggctgcaaatggcccgcgggccgtagtttggacacccctgctataaGGGCTAAACAGATGTGTCTGCCAGCAATGTGTTGGCAAAGATGAATTATTACAACACTGTAGTTTGACAGCAGCAGCCTGAAGGAGTGTGCTGGATTACTGACAGCTCAGTGTCTGCTTTAATCTCAGAGCAGTGTGATTTAATTCATACACAAAACTATAAAAGACATTTAGAGGAAATTCCAGGATTTTAGtgcatttcaggggtggtctcttctgaaaatttgattttcaatttgatcattttagtcatatatttatt
>TU245870
ttttagactctttggcctgtttttctgcgctagaaatgcgcactctctccacttttagactctttggcctgtttttctgcgctagaaatgcgcactctctccgcttttagactttttggcccgtttttctgcgctagaaatgcgcacattctccgcttttagactctttggcccgtttttctgcactagaaatgcgcactctctccacttttagactctt

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

RNA

RNA id representative length rna type GC content exon number start site end site
TU245867 False 911 lncRNA 0.44 2 35790216 35792691
TU245868 False 231 lncRNA 0.45 2 35790216 35791118
TU245869 True 1022 lncRNA 0.41 2 35787101 35792691
TU245870 False 220 lncRNA 0.45 2 35790216 35790487

Neighbor

gene id symbol gene type direction distance location
LOC111194993 NA coding upstream 157639 35622099 ~ 35629462 (+)
LOC103023820 NA coding upstream 168827 35607772 ~ 35618274 (+)
LOC103043521 adgrg2 coding upstream 190855 35557928 ~ 35596246 (+)
LOC103023494 LOC107577900,LOC108442441 coding upstream 245310 35518171 ~ 35541791 (+)
LOC103023179 tmem120a,LOC108276692,LOC107728827,LOC107579123 coding upstream 282338 35498326 ~ 35504763 (+)
LOC103047081 LOC103047081,LOC108411574,LOC107589340,LOC100004523,LOC107697431,LOC107686183,LOC107578020 coding downstream 182786 35975477 ~ 36166303 (+)
G181439 NA non-coding upstream 155150 35630171 ~ 35631951 (+)
G181424 NA non-coding upstream 242885 35542348 ~ 35544216 (+)
G181415 NA non-coding upstream 298633 35484101 ~ 35488468 (+)
G181413 NA non-coding upstream 304479 35482286 ~ 35482622 (+)
G181408 NA non-coding upstream 315169 35470705 ~ 35471932 (+)
G181586 NA non-coding downstream 68510 35861201 ~ 35901409 (+)
G181605 NA non-coding downstream 129054 35921745 ~ 35922340 (+)
G181614 NA non-coding downstream 193374 35986065 ~ 35989603 (+)
G181615 NA non-coding downstream 208988 36001679 ~ 36002625 (+)
G181616 NA non-coding downstream 211848 36004539 ~ 36008418 (+)
LOC103044041 NA other upstream 84106 35685004 ~ 35702995 (+)
LOC107197592 NA other upstream 179508 35600483 ~ 35607593 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other upstream 383477 35392521 ~ 35403624 (+)
LOC103024954 LOC108423745 other upstream 1279777 34334576 ~ 34507324 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other upstream 1458131 34172924 ~ 34328970 (+)
LOC103024766 zdhhc20a,LOC107589301,LOC107743391,LOC107686182,LOC107728865,LOC107697429,LOC108411113,LOC108276908 other downstream 23344 35816035 ~ 35842871 (+)
G181734 NA other downstream 413876 36206567 ~ 36209854 (+)

Expression


Co-expression Network