LOC103024766 (zdhhc20a,LOC107589301,LOC107743391,LOC107686182,LOC107728865,LOC107697429,LOC108411113,LOC108276908)


Basic Information

Item Value
gene id LOC103024766
gene name zdhhc20a,LOC107589301,LOC107743391,LOC107686182,LOC107728865,LOC107697429,LOC108411113,LOC108276908
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35816035 ~ 35842871 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU245880
AAGGtaaaattctcatttgtgaaagttgggtttaatgccactttgaaataaagttggaaaaaagtaagcaattatattatttagtcatatttttccaaaaaataactgaaaacatacttaaatgtggtatatcatgatatatatcgttatcgtgatataaaaaaacctccatatcgtgatatatgatttttcccttATCACCCAGCACTAGTTTAAAGTAACTCATGGTTGGCCAAATATGTTTAAAACTCTACACAACTTTTACTCCTGTGAGTGAAATGAAAGTTTCCTCTCTCCTGACAGAGGCCTCAGAGCGCCGGTGTTCAGAAACGGCCCTGATAAAAACGGCTTTACTGTGGGCTTCTACAAGAATCTCACCCAGGTTTTTGGAGACCAAAAGAGATACTGGTGCTTACCTGTTTACACCAGTTTGGGAGATGGTTATACATTCCCCACTCGATTAGTCAACCTTGATTCTGAACAAGGAAATGTAGACCACCAGGCCGACCCAAAAAGTTCTGTAGACGGCCAAGTCAACAGCAGGCCTCTGAGTGACTCACTGAACCATCTCCTGAGCAACGATGTGCATTCAGATGAACAGAAGGACAGCAACAGTGCAAAGACTGATAATGGTCTGACCGTCACCGTCACTATGGAGAGTGAGTCTTAAACATGATCTTCAGGAAAGAGTGTACCAAGGCCAGTCTGATCACATTCGGAGCTGTGAACTCAACGTTTAACTCCAGAGACCACAGAGCCAATCCAAATGCCTTAAGCTTAGCAGCTCCCATCGATCGCCATGGAAACCGGTAACCAATGAACACGCATGTGAAGCATCATCCATGTTACTATGgacttttctcatttctcagtactgtctctactgtactAATGGGACCTCTCTCAATATCACAtgacttatatacacacacaatacacacacacaatacaccacacacacacacaacacacaatacacacacacaatacacacacacaatacacacacaatacacacacacaatacacacactcacacacacacacaatacacacaaacacaaactcacacacacacaatacacacacacacaatacacacacaatacacacacatacaaacacacacaaacacaaactcacacacacacacaatacacacactcacacacacacaatacacacacacacaccaatacacacacaatacacacacaatacacacacacacacacacacacaatacacacactcacacacaatacacacacacaatacacacacatacaaacaaacacaaactcacacacacacttttttgaCCAAATAATCcagttgaattttttttgttgtttttgtttcttttatttgaaCTGATTTTGGAAATCTTATGTTTTTCACTTTGACTTTTTTAAGACAAACCAGATAAACGATAAATGAACTGATTCTGGAACAGTGATGGTACTTGAAACacttatctttttttgtttgttgtttttttttattttttattataaaaatatttttatcaccattaagtaaagaaaacattgGTGTAATTAGTAATAAACACTACAGTCTAATCAGTGCGCAGAAGAACAAGAGCAGGATTGTTAGGCCTGTTGAAGgctagtttattttatttattttttttatctaatctgTTTGTCACTTTTCTAACAGATGGTGGTTTTCCgtgctcaaaaaaataatccagttatttaaaaaaaaaagaacagaaaatctTTTGACTTGAAGCACAGAGAGAAGCCTGTGGGCAAACGCTGaagtaaaatgtgaaatgttgtttttaaatacttttctaACTTTCTGTAGAGATTCAGAGCAGCTTAATGTTGGATTAAATAATGCAGGAAAGTGTTTCTCTGTTATCAAGCTCTCTGAAATGCTTCTTCTTTTGAATGAGGGCTTAAATGAGCAACTTTCTGTTTGTAATTTGCATCAGAATCTGAAGCTGAGAGCGGGTACTAAATTATTTCCCATTAGAAGCTCATTAAACAGGATAAAATCATCCTCACATTTCAGCTTCGCTCTTCTGAGACTTAACAACTGATTCTGTGGCATTACTGAACCACCTCAGAGTCTCTTCAGCCCTGAACAAGACCTGCATTCTTAGAGtttattcaggagtttattcTGTTAATCAAACTAAGCAAATTTAACTTCTCATCAGACGTAATAAAACGGATAGAATCCTATCTTTCGAACTGTTCACAGTCTGTTAGGATCAGTGACTCCCACTCCCCGCCCCTCGCTCTGTCCACTGGGGTACCTCAGGGTTCTATTTTGGGGCCTCTGTTATTTTCACTTTATATAAATGACTTGCCCTCAGCATACAGATATATGCAGATATGCACATGTAGCTGAAAAACTTCTAAACAATCTCTGGCCCATGTCTCTGAATGGCGTAAATAACATAACAACGTAAATAAAACAGTTTCGATTTTATAATAAAGCAGATATTTATGTGACaggtgaaaaatataaaatgataaaatgtgttGTCTGAATTTAAGCATCTACGTATCTTAACAGATTCCAAATTATTATTCATGTTGTTTTTAGGTAGACCATTTTAAGATCTGTCCAGAGACAACGGATGAAAAAAGGCCTTAAGGCTGATTCTGGtgcatttacagtaatgttaattaatgtacactgtccctgttaaataagctattaaataaaataaatattcaggAGTTGTTGGTACAGTGTAGTGTTGGTGAGTCAGATTAGTCTCGGGAACTTGGTGTTAGGAAAGCATTTTAGAGCAAAGGGTGCTTCTACAGACAGGATAAAAGTATTATTCTACTTATTAATATTGTAGGGCGATATGATGAGCAGGAAGCGCGTCCCATTAAGAAGAGATACCTGCACTCATCTCTTTCTGCAACAACtgcttatatttaaaaataacacaccAGTAAAACAGATACTCATTATAATGGTATCTATACATTTAGGATAAACTGAAATGAAAGAGAGCGTGTTATAAACAATAACTGGATTACCATTTCAAATTAGAGCTAAAAATCAGCTGAATAATAGAAACTAAAGCTTAGCTGAACACATGATGGATTAAAAAGACCTGTTTCTACAATAAAACTAATGATCTAATGATAtcatctaaatatatatttcttctttAAGTGCTTATACATTTAATGCTATAAGTACTTTTCATGATGTTGCTCACATAGTTTTACAGAAGTGCAGGCAATTTCATTTAaacaaattacttttaattacgaACCGTGAAGACTTCACTAAAAAGGGCATTACTAAAAGTATCTTTGTTTGAAAAAGAGATTTGCTGCTTTTTGGTatctgctattttttatttgctattttttattttatttcatataatttctttaaaaaaaaaaatccaaaatgtgataataaaaaaaaaacaataaaacttgaaaacagaaaaaaatcaatcagaTTTTATAGGGCAGCAATAGTGCCATCTAGCTCTCAGATTAGGAACTGCAGCCTTAAACTGCACTGCTGCAACCTGTAACATGGATCATATAATCTGACCAGCTCTCAGCATAGGCTATAAACATTGTCCAATCACCAActagatatttttatattttttcagaaaTCAGTCAACACCATTACATAGCTGATCAATACATCTGTCTCTGATGAcagataccaaaaaaaaaaaaatctgaatagaTTACAGGAGTATTTAGAATATTACACAGCTATTAAACcgcttaaatataaatgttatattttaaattattgaaatattaattctataaaataagtaatttttttatttacaatccAGTTGATCCCAAACTTCTGAATGCTGGTGAATCTGGATCAGGACTTTAGGATAAAGTGTCTTTAGGAATGCAGCTCTTGGGTCTTCAGGTTTATGAATTGGTTTAATAGATTATAATTTCAGTTCTTTGAAGAACTCGGGTAAAAGAGAGGTTAGAAAGTAGAAGCTTGTCTTGTATTTCCCATAATCTGATCATTCTCACTCTGTACTTAATCAAaataatattagcattagcattagcattagcactcaCACGGTTCATTCATGTGCTTCAGAAGTTGCTCATTTTAAGGTTTAAAACATGAgctgctctttttttattttatttttgtttttatattttgatgtcAGCTGCCTTTTACAAAGTGTCAATATGTTATAATGaaagaccaatagaaatactccaaaatactgtttatattttGATATGTGAATACCATTATCAGCCATAACAGCAAAGCCACACGTCTGATGTTCAACAGGTCCGACTCATTCTGCCAAAACAGCTCGGATTTATCAATTAGAGAACTCTAACAGAATGCTGTGGCTGTATTTATCTGTATTATCCTGGCACTGAGACTAGCAGCAGATCTTCCAGTCCAGTCAGGTTTAGATGGGCTAACCTTCACCAGTGTTCACCAGTTTTCTTTcccactaggggtgtcacgattctctaaatcctca
>XM_022681510.1
GAATGAATTTTCCGGGGTAAAGCCCCTCTTTGTTTGGCTCAGCTGTTTCTGGCCGGACTGAGGGACgtcactgcctctctctctctctctctctctctctctctctctctctctctctctctctttttttccatccctctctctctccgcggCCGGATTAAAGATGGCGCCCTCTCGTGTGTTGAGATGCTGTCAGCGGGGCTTATCGTGGATCCCTGTTATCTTCATTAACCTGGTCGTATGCTGGTCCTACTACGCCTACGTCGTGCAGCTCTGCATCTacACAATCCCTAACCCTGAAGAGCAAGttaTTTATCTGGTAGTCTTTCATGTTTGCTTCGTAATGTTTATGTGGTCATACTGGAAAACTATCATTTCCAAGCCCAGCAATCCTTCAAAGGAGTTCTTTTTGCCGAAGGCAGAAAAGGAGCAATATGAAAAGGAGGAGAGGCCGGAAGCCCAGCAGGAGATCCTCAAGAAAGTGGCCAAAAATTTACCCATTTACACTCGTACAGGCTCTGGAGCAATCCGCTACTGTGACTGCTGTCAGCTGATCAAACCGGACAGATGTCATCACTGCTCTACCTGTGACCAGTGTGTTCTAAAAATGGATCATCACTGCCCCTGggtcaATAACTGTGTGGGTTTCTCAAACTACAAGTTCTTTGTGCTGTTCCTGGCGTACTCCATGctgtactgtgtttttattgcgTCCACCGTATTGCAGTATTTCATCAAATTCTGGACAAATCAGATAGACACTCACGCCAAGTTCCACGTGCTGTTCCTCTTCTTCGTGGCAGCCATGTTCTTCGTCAGCATCATGTCCCTGTTCACCTACCACATCTGGCTCATCGCCAAGAACATGACGACTATAGagtGCCTCAGAGCGCCGGTGTTCAGAAACGGCCCTGATAAAAACGGCTTTACTGTGGGCTTCTACAAGAATCTCACCCAGGTTTTTGGAGACCAAAAGAGATACTGGTGCTTACCTGTTTACACCAGTTTGGGAGATGGTTATACATTCCCCACTCGATTAGTCAACCTTGATTCTGAACAAGGAAATGTAGACCACCAGGCCGACCCAAAAAGTTCTGTAGACGGCCAAGTCAACAGCAGGCCTCTGAGTGACTCACTGAACCATCTCCTGAGCAACGATGTGCATTCAGATGAACAGAAGGACAGCAACAGTGCAAAGACTGATAATGGTCTGACCGTCACCGTCACTATGGAGAGTGAGTCTTAAACATGATCTTCAGGAAAGAGTGTACCAAGGCCAGTCTGATCACATTCGGAGCTGTGAACTCAACGTTTAACTCCAGAGACCACAGAGCCAATCCAAATGCCTTAAGCTTAGCAGCTCCCATCGATCGCCATGGAAACCGGTAACCAATGAACACGCATGTGAAGCATCATCCATGTTACTATGgacttttctcatttctcagtactgtctctactgtactAATGGGACCTCTCTCAATATCACAtgacttatatacacacacaatacacacacacaatacaccacacacacacacaacacac
>XR_002651489.1
GTGAATGAATTTTCCGGGGTAAAGCCCCTCTTTGTTTGGCTCAGCTGTTTCTGGCCGGACTGAGGGACgtcactgcctctctctctctctctctctctctctctctctctctctctctctctctctttttttccatccctctctctctccgcggCCGGATTAAAGATGGCGCCCTCTCGTGTGTTGAGATGCTGTCAGCGGGGCTTATCGTGGATCCCTGTTATCTTCATTAACCTGGTCGTATGCTGGTCCTACTACGCCTACGTCGTGCAGCTCTGCATCTacACAATCCCTAACCCTGAAGAGCAAGttaTTTATCTGGTAGTCTTTCATGTTTGCTTCGTAATGTTTATGTGGTCATACTGGAAAACTATCATTTCCAAGCCCAGCAATCCTTCAAAGGAGTTCTTTTTGCCGAAGGCAGAAAAGGAGCAATATGAAAAGGAGGAGAGGCCGGAAGCCCAGCAGGAGATCCTCAAGAAAGTGGCCAAAAATTTACCCATTTACACTCGTACAGGCTCTGGAGCAATCCGCTACTGTGACTGCTGTCAGCTGATCAAACCGGACAGATGTCATCACTGCTCTACCTGTGACCAGTGTGTTCTAAAAATGGATCATCACTGCCCCTGggtcaATAACTGTGTGGGTTTCTCAAACTACAAGTTCTTTGTGCTGTTCCTGGCGTACTCCATGctgtactgtgtttttattgcgTCCACCGTATTGCAGTATTTCATCAAATTCTGGACACTTTGCAGGAGAAGAGCAATAGAGCATTGTCCAGAGAATCAGATAGACACTCACGCCAAGTTCCACGTGCTGTTCCTCTTCTTCGTGGCAGCCATGTTCTTCGTCAGCATCATGTCCCTGTTCACCTACCACATCTGGCTCATCGCCAAGAACATGACGACTATAGAGGCCTCAGAGCGCCGGTGTTCAGAAACGGCCCTGATAAAAACGGCTTTACTGTGGGCTTCTACAAGAATCTCACCCAGGTTTTTGGAGACCAAAAGAGATACTGGTGCTTACCTGTTTACACCAGTTTGGGAGATGGTTATACATTCCCCACTCGATTAGTCAACCTTGATTCTGAACAAGGAAATGTAGACCACCAGGCCGACCCAAAAAGTTCTGTAGACGGCCAAGTCAACAGCAGGCCTCTGAGTGACTCACTGAACCATCTCCTGAGCAACGATGTGCATTCAGATGAACAGAAG
>XR_002651490.1
ATGAATTTTCCGGGGTAAAGCCCCTCTTTGTTTGGCTCAGCTGTTTCTGGCCGGACTGAGGGACgtcactgcctctctctctctctctctctctctctctctctctctctctctctctctctttttttccatccctctctctctccgcggCCGGATTAAAGATGGCGCCCTCTCGTGTGTTGAGATGCTGTCAGCGGGGCTTATCGTGGATCCCTGTTATCTTCATTAACCTGGTCGTATGCTGGTCCTACTACGCCTACGTCGTGCAGCTCTGCATCTacACAATCCCTAACCCTGAAGAGCAAGttaTTTATCTGGTAGTCTTTCATGTTTGCTTCGTAATGTTTATGTGGTCATACTGGAAAACTATCATTTCCAAGCCCAGCAATCCTTCAAAGGAGTTCTTTTTGCCGAAGGCAGAAAAGGAGCAATATGAAAAGGAGGAGAGGCCGGAAGCCCAGCAGGAGATCCTCAAGAAAGTGGCCAAAAATTTACCCATTTACACTCGTACAGGCTCTGGAGCAATCCGCTACTGTGACTGCTGTCAGCTGATCAAACCGGACAGATGTCATCACTGCTCTACCTGTGACCAGTGTGTTCTAAAAATGGATCATCACTGCCCCTGggtcaATAACTGTGTGGGTTTCTCAAACTACAAGTTCTTTGTGCTGTTCCTGGCGTACTCCATGctgtactgtgtttttattgcgTCCACCGTATTGCAGTATTTCATCAAATTCTGGACAAATCAGATAGACACTCACGCCAAGTTCCACGTGCTGTTCCTCTTCTTCGTGGCAGCCATGTTCTTCGTCAGCATCATGTCCCTGTTCACCTACCACATCTGGCTCATCGCCAAGAACATGACGACTATAGAGGCCTCAGAGCGCCGGTGTTCAGAAACGGCCCTGATAAAAACGGCTTTACTGTGGGCTTCTACAAGAATCTCACCCAGGTTTTTGGAGACCAAAAGAGATACTGGTGCTTACCTGTTTACACCAGTTTGGGAGATGGTTATACATTCCCCACTCGATTAGTCAACCTTGATTCTGAACAAGGAAATGTAGACCACCAGGCCGACCCAAAAAGTTCTGTAGACGGCCAAGTCAACAGCAGGCCTCTGAGTGACTCACTGAACCATCTCCTGAGCAACGATGTGCATTCAGATGAACAGAAG

Function

symbol description
zdhhc20a Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in Golgi membrane; perinuclear region of cytoplasm; and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC20 (zinc finger DHHC-type palmitoyltransferase 20).

NR:

description
PREDICTED: probable palmitoyltransferase ZDHHC20

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245880 True 4513 TUCP 0.35 6 35830681 35842871
XM_022681510.1 False 1548 mRNA 0.47 14 35816037 35839117
XR_002651489.1 False 1217 misc_RNA 0.48 12 35816035 35836197
XR_002651490.1 False 1177 misc_RNA 0.48 11 35816039 35836197

Neighbor

gene id symbol gene type direction distance location
LOC103024448 LOC108413536 coding upstream 26798 35736965 ~ 35789237 (+)
LOC111194993 NA coding upstream 186573 35622099 ~ 35629462 (+)
LOC103023820 NA coding upstream 197761 35607772 ~ 35618274 (+)
LOC103043521 adgrg2 coding upstream 219789 35557928 ~ 35596246 (+)
LOC103023494 LOC107577900,LOC108442441 coding upstream 274244 35518171 ~ 35541791 (+)
LOC103047081 LOC103047081,LOC108411574,LOC107589340,LOC100004523,LOC107697431,LOC107686183,LOC107578020 coding downstream 132606 35975477 ~ 36166303 (+)
G181556 NA non-coding upstream 23344 35787101 ~ 35792691 (+)
G181439 NA non-coding upstream 184084 35630171 ~ 35631951 (+)
G181424 NA non-coding upstream 271819 35542348 ~ 35544216 (+)
G181415 NA non-coding upstream 327567 35484101 ~ 35488468 (+)
G181413 NA non-coding upstream 333413 35482286 ~ 35482622 (+)
G181586 NA non-coding downstream 18330 35861201 ~ 35901409 (+)
G181605 NA non-coding downstream 78874 35921745 ~ 35922340 (+)
G181614 NA non-coding downstream 143194 35986065 ~ 35989603 (+)
G181615 NA non-coding downstream 158808 36001679 ~ 36002625 (+)
G181616 NA non-coding downstream 161668 36004539 ~ 36008418 (+)
LOC103044041 NA other upstream 113040 35685004 ~ 35702995 (+)
LOC107197592 NA other upstream 208442 35600483 ~ 35607593 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other upstream 412411 35392521 ~ 35403624 (+)
LOC103024954 LOC108423745 other upstream 1308711 34334576 ~ 34507324 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other upstream 1487065 34172924 ~ 34328970 (+)
G181734 NA other downstream 363696 36206567 ~ 36209854 (+)

Expression


Co-expression Network