G181615


Basic Information

Item Value
gene id G181615
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 36001679 ~ 36002625 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU245948
TCAGCATCAGTGATCAGCTGATCAGGCTGAAACTCTACTTTTAGTCACATGTACATATTATTATTTCACTTTTACACAGCTGAATAGTATTTTAGTCACTTTTTCAGCCATTACTTTGTGCTCTTATACAGCACTGTCTTTCTGTCAAGACATTCGGCTGGTTTTTATCATCTTCCTCAGAAGTGAAAGATGAATTTCACTGTGAGTTAAAGCTTCCACTGCGCTTTAGTGTGTCCTGGGCTGAAAGCCTCACTCACTTTCTGACAAGCCACCAATTGTGACATGACTCTGATGCGACATCAGGGAGAAAACCTCATTCAGATTCTGACTCGCAGCCGACCGGCCGGCCGAGGATAATGCAACTATTCCCAACAGACACAGACTAGCAGAAAACACCAGATAGAAAATGATGATAATGTTGGAAGACAGACTCCCATTGGTATCAACATGTTCCTTTTCACATTACTTTATAACTGAACTCGCCATAGGATGTATAGTAGCTCATTTCATTATTCAGTTTACTGGAATACAATtcaaattttttaaatttgttggAAAAATGTCACTATGACTACGTTCACTTTAAAAGCCACATTGCTCGAAACctattttttgctcaaatctgttcctgaaacgtctcacatgctgcacattgatacctgtataaacgcctccttcttcaccaacaacaaaaaccctcatattagagagaggagagactcgtagctttataaagggaaatggatgagttagcagctcatatgtggagcatcttttgctggagtggagagtaaacagctgctctgaagttcatgctcaggtccaggaggagaaaaaaggacaggtggtttgcttttgctgttttttttttgcagctatagc

Function

GO:

id name namespace
GO:0009250 glucan biosynthetic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005978 glycogen biosynthetic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00680 Methane metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU245948 True 882 lncRNA 0.40 2 36001679 36002625

Neighbor

gene id symbol gene type direction distance location
LOC103024448 LOC108413536 coding upstream 212442 35736965 ~ 35789237 (+)
LOC111194993 NA coding upstream 372217 35622099 ~ 35629462 (+)
LOC103023820 NA coding upstream 383405 35607772 ~ 35618274 (+)
LOC103043521 adgrg2 coding upstream 405433 35557928 ~ 35596246 (+)
LOC103023494 LOC107577900,LOC108442441 coding upstream 459888 35518171 ~ 35541791 (+)
G181614 NA non-coding upstream 12076 35986065 ~ 35989603 (+)
G181605 NA non-coding upstream 79339 35921745 ~ 35922340 (+)
G181586 NA non-coding upstream 100270 35861201 ~ 35901409 (+)
G181556 NA non-coding upstream 208988 35787101 ~ 35792691 (+)
G181439 NA non-coding upstream 369728 35630171 ~ 35631951 (+)
G181616 NA non-coding downstream 1914 36004539 ~ 36008418 (+)
G181621 NA non-coding downstream 47944 36050569 ~ 36051912 (+)
G181622 NA non-coding downstream 53417 36056042 ~ 36058638 (+)
G181642 NA non-coding downstream 200581 36203206 ~ 36204771 (+)
LOC103024766 zdhhc20a,LOC107589301,LOC107743391,LOC107686182,LOC107728865,LOC107697429,LOC108411113,LOC108276908 other upstream 158808 35816035 ~ 35842871 (+)
LOC103044041 NA other upstream 298684 35685004 ~ 35702995 (+)
LOC107197592 NA other upstream 394086 35600483 ~ 35607593 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other upstream 598055 35392521 ~ 35403624 (+)
LOC103024954 LOC108423745 other upstream 1494355 34334576 ~ 34507324 (+)
G181734 NA other downstream 203942 36206567 ~ 36209854 (+)

Expression


Co-expression Network