smg8 (smg8,LOC107686170,LOC107589184,LOC107577889)


Basic Information

Item Value
gene id smg8
gene name smg8,LOC107686170,LOC107589184,LOC107577889
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35472086 ~ 35477772 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229767.3
GGTGACGCTCACGGAAATGCCGCCCTCCCGCTGTAATGTTGTGAGTGCTGGGAGCGGTGATGGCGGCGCCGGTGGGTATCGGCGCGCTGCTGCGGTGCGAGGGGGTGGAGGACGCGCTGTACAAGGAGGAGGGGGTCTGCGTGCTCGGCGTGTTCGGGAAGAGCGCGCTGCAGTCCGGCTCCGCTAAAGAGGCGCTTATTAACGTGCTCGCGGACAAACACGTCTTTCCCCTGttcagcggcggcggcggcggcggcggcggcggcggcgcggGGGAGAAGAGCGGGGTGGTGGAGGGCGGCAGCTCGATCAAAGCCTACTACAGCCAGGAGAGCCGGGTCCTGTACCTGGTGCTCACCTCCGTGTTCGACAACAGGCAGCTCCTGAAGGCCTGCGAGGGTCTTACCTCGGGTCTGGGCCACGCTGAAGCCCACGACTTCTGGAAGGGGGCTGAGAAAGAGCACTGCCTCCAGCTGCTGTTCCTCTTCTCCCTGTGCCATGTGCTGCTGCTGGTCCATCCTACCTGCTCCTTCGATGTCACCTATGACAGGCTGTTCCGTGCCCTGGACCCCCTGCGCCAGAAGGCCTTGCCCCTGCTCCGCGGGGCCATAAAGGACTGCCCTGTGTCCAAGGAGTGGAAGATGAACTGCAGGCCGTGCCCCCCTCGCCTGCTGTTTGTGTTCCAGATGAATGGGGCACTCAGGGTCAGCAGCTCGTCTGGTGGGAACGGCAATGATGGTCCTGGGGGAGACAAGCCCAAGAAGCACTCTCCCAGGAGGCGTCTCCAGCATGCTCTGGAGGATCAGATCTATCGGATTTTCCGCAAAAGCAGAGTCCTCACTAACCAGAGCAGCAACTGTCTCTTCACAGTGCCAGCCAACCAGGCATTCGTCTATGTGGTTCCAGGCCCAGACGAGGACCCCATCAGCTCCCTGCTAGGCCAACTGCGTTCAAACTGTGCCCTACGAGAGAATGATGCTGGCACTCCTGTCCCTGGGCCAAGGAGGTACCAGCAGATGCGCCACTCCAACCGGCAGCCCTCCTTCAACGTGGAAAACAACggcttcttctcctcctcaggGGGTCAGCTAGTGGACTGTACCCTGAAGGAGTTCCTGTGGCAGCACGTAGAGCTTGTCTTGAGCAAGAAAGGCTTTGATGACAGCGTGGGTCGCAACCCACAACCGTCTCATTTTGAGCTGCCCACCTACACCAAATGGGCCCACATTGCCTACAAACTCTACCAGGTGATGATTGAAACCAGTGATGATGAGACGGCTGAGCTCTCCCTTAAAGTGCAGGGTCAGCTGAAAGTGCTCGAAGGCTTCCTGGACGCAGACGCCAAATTTTCTGAAAACAGGTGCCAGAAAGCCTTGCCTCTGGCCCACAGCACATACCAGTCTAACCTTCCTCACAACTACACTACCACAGTGCACAAGAACCAGCTGGCTCAGGCTTTACGGGTTTACAGTCAGCACGCCAGAGGTGTAGCCTTCCAGCGGTATGCCTTACAGCTCCATGAGGACTGCTACAAGTTCTGGAGTAATGGACATCAGCTGTGTGAGGAGCGCAGCCTCACAGATCAGCACTGTGTGCATAAATTTCACCTGCTGCCCAAATCAGGTGAGAAGCCAGAGATGGACCACAACCCTCCTATTCTCTACCACAACAGCAGAGGGCGCTCTACGAGTTCCTGTAACTGTGGGAGAAAGCAGGCCCCTCGAGAAGACCCGTTTGACATCCAGGCTGCCAACTACGACTTCTACCAAATTGTCGAGGAGAAGTGCTGCAGTAAACTGGAGAGGATAAACTTTCCTGTGTTCCAAGCCAGCACACCAGACCCGGCCCCTGCGTGCGACGAGGTGACCAGATCTGCAGAAGTGGCTCCATCTGGGGAGGTAGATCGtcttaaagagaaagagactgttACCCATACGCCAGGAGACAGTACTGGTCTGAGCCTAGCTCTCAGTCTAGGCCAGTCCACAGACAGCCTTGGCCCATATGGCGATGGAGCAGAAGGGCATGAGAAAAGGCCAAGTGTGGACCGTCAGGCCTCCACTGTGGAGTATCTGCCTGGCATGCTTCACTCCGGCTGCCCGAAGGGACTGCTGCCGAAGTTCTCCAGCTGGTCATTAGTTAAACTTGGTCCAGCTAAAGCTTACAACAACCTCACAGGCTTAGAGCAGCCTGGCTTCCTCCCTGGCTCTGCCTTCCTCTTACCATGGGACGTAGTAATCCGAAGTCGCTCTGAAGACGACCCGAGTTCTTTAGAAGCCCTGGATGGTGGACCTTCATCATGGCCAGCTCCCAACAAAGCACCTGCTGGGAAGAGAGGCAGCGCTGGGGTTGGACGTGGTCGGAGACGTGACGATGTTGCACGCGCCTATGTTGGTTTTGAGTATGAGGACAGCCGAGGTCGTCGGTTCCTCAGCTCTGGACCAGATAAGGTTGTAAAGGTTCTCGGACAGGGAGGGGCAAAAGAGCCGGCTACTCGGGCCCTGAACTCTGACATGCCTTTGTACATTCCATCTCCCGCTCAAGGCAGAGGGATCAAGCCTCACTATGCTCAGCTGGCTCGTCTCTTTGTTGTGGTTCCTGATGCCCCACTTGAGATTACGCTTAGCCCACAGATTCAGCCAGGCCCTCCACCCTGTCCCATTTTCCATCCAGAGCAGGCAGAGGTTGTGCTGCCCCCTGATGGACTGTGGGTGCTACGCTTCCCGTATGCCTACGTGACAGACCGTGGACCATGCTATCCCCCCAAGGAGAATCAACCGCTGGCAAGCTTCAGGGTCCTGAAGGGCATACTGCGTGCTAACACAGCCAGTTCTCCTCCACAAtgactcacacacaaacacctatttaattaactttttgaATTAAATCACCTGGTGTAAAAGACAGCCTGAAGGCCTTTTCCTGGATGTATTTTACCTGTCCACGTAAATGCCTACTGCTCAACTCTGTAACTGTTTTTCATCCTCAGTTCGATTATTCtaaagaatattttaatttggttatGTAAAACAAATTCAAAGCTGTGTGTAGCTCAGGTGTTGGAGTTAAACAGTGGAGTTAAGAATAAAAGTTGAAATAATCATTATAAAAA

Function

symbol description
smg8 Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Orthologous to human SMG8 (SMG8 nonsense mediated mRNA decay factor).

NR:

description
PREDICTED: protein SMG8

GO: NA

KEGG:

id description
K18734 SMG8; protein SMG8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229767.3 True 3112 mRNA 0.55 5 35472086 35477772

Neighbor

gene id symbol gene type direction distance location
pom121c pom121c coding downstream 53575 35404754 ~ 35418511 (-)
ripk4 ripk4,LOC107577855 coding downstream 77861 35366285 ~ 35394225 (-)
c20h21orf91 cunh21orf91 coding downstream 122467 35308999 ~ 35349619 (-)
supt20h supt20h coding downstream 168701 35276540 ~ 35303385 (-)
alg5 alg5,LOC102793295 coding downstream 202778 35254774 ~ 35269308 (-)
prr11 NA coding upstream 2523 35480295 ~ 35488505 (-)
rhbdd2 NA coding upstream 64547 35542319 ~ 35552188 (-)
LOC103044945 gabrr3,gabrr3a,LOC107589257,LOC107697425,LOC107686176,LOC106603079,LOC106563567 coding upstream 160233 35638005 ~ 35674164 (-)
LOC103045257 LOC108411116 coding upstream 328960 35806732 ~ 35810671 (-)
smg6 NA coding upstream 368618 35846390 ~ 35873586 (-)
G181491 NA non-coding downstream 4459 35466008 ~ 35467627 (-)
G181480 NA non-coding downstream 21694 35410419 ~ 35450392 (-)
G181479 NA non-coding downstream 69160 35399178 ~ 35402926 (-)
G181466 NA non-coding downstream 120880 35290594 ~ 35351206 (-)
G181465 NA non-coding downstream 155905 35283414 ~ 35316181 (-)
G181510 pora,LOC108442441,LOC107577900,LOC107589225 non-coding upstream 57964 35535736 ~ 35536768 (-)
G181519 NA non-coding upstream 96158 35573930 ~ 35574384 (-)
G181529 NA non-coding upstream 120752 35598524 ~ 35598765 (-)
G181533 NA non-coding upstream 129120 35606892 ~ 35607986 (-)
G181540 NA non-coding upstream 140110 35617882 ~ 35625755 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other downstream 1297 35433232 ~ 35470789 (-)
LOC103033173 NA other downstream 1616454 33805240 ~ 33855632 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other downstream 2887743 32436325 ~ 32584343 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other downstream 3209488 32240179 ~ 32262598 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other downstream 3400162 31894202 ~ 32071924 (-)

Expression


Co-expression Network