smg6


Basic Information

Item Value
gene id smg6
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35846390 ~ 35873586 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229772.2
GAGGCTccgtatgtttgtgtttgtgtttgctgGTGGGGAAATGGCGGATGAGCTGGACAGAGTCCGGATTTCGGCGGCGGAGCTGCGGGCAGAGGCGCGCAGGGAGAGCGTTAAAGACTTTCCAGAGACAAGTAAGAAGCAGAGGCAACGAGAGTGTAAACGTCCAGACATGCAGCGGTACCAACCCGGAGTAGGGCAGAGACGCAAAGGCAGTGCAGAGGGAGAAGTGCAAGCAGCCTCCTCTGAATGTGTACACGTGGACTCTGACGTCAAAATGCcttctgcttctccatcaggTTCTGACCTGAAACTCGTCAGCAGAAACTGTCAGTCTGGACCAAGCGCCATTACTGTGGACAGTGCTAATAATATGCATTCACATGCTGGGACAAATGTGATTAAAGATGGCCAAGGGTCAAGCACTGACATTCTTGGGTCTCCAAAACTGTCTCGTAAAACACGTAAACCTGATCGTGAGATATATCAGCCAGGTGGACGAAGGTCTCAAGGCAGTAGAGACTCTGGTTCAAACAAGCATGGATCCAAAGAGGAAGTAAAGGGGGAAGAGGGAGAGTTAAGTAAGGAAAACCTAATTGGGTCAGAGAAAAATAAGGATGTACGTGCAGAACCTGggaaggagaaggaggagaaagGAAAAGGGAGAAAAGgcaaagaaggaaagaaaaaacgaGAGGTAGGAAAACAACAGAAAAGTTTAGAACTATCTTCTGACCATAATGATCCGACCCCTGTTGAAAATCTAACGGACAAAGTGGAGAAGCTTAATATCAGCAGCCCCCAAGCTGCTTGTATGGAGACGGAAGAAAAAAAGGGAACAAAGGGTGACGATGGTggcaatagaagaagaaaatcaAATGGAGATAACCAAAGGAACAAAGCAGCTGGGGGAGAAGGCATAATGGGTGCGGAAGATGAGAAGAGAAATCAGAGAAGTAATCGGAGGTCTAGAGGTGGCAGGGAGAGAGGTTCAAACCAGGCTTCTGGGAAAAGGGAGGAGGGAGAAGGAGGGGAGAAGAGCTCATCAACAAATCAGTTAGAGAAAAATACTGAACGAATGGTGGAAGGAGGACATCAGTGGGATGTGCAGAAAAAAGATGTTTATCAAGACCAAAACTTGCAACAGCAAAAGCATAGAGGGAACCAGCCAagagagaaggatggagagaggcGCAGGGCATCCGAAGGAACAAACAATAGCAAAATGAGCTCTGCTTCAAAACGTTACTCAAAATCAGACATCCGACGACCACGAAACCGGACATACAGTACAAGCTCAGTTAGCAGTGGTGCCAGTATGGACGGACTTGGAGAGTCTGATAGACGAATAACTGGTGGAGGTGTTGTGGGAAGGGAGAGGGGCGAAGGAGGACTGCCTCCAAGGTCTAATGAAAGAACAACAGAGAAGAAGGACCGGACTATGGGGAACAAGCCTAGACAGAGGAAGTGGACTGCAAGAGATGTCTCCTCCACCGATTCCTTTGAAGAGAGTGAGATGTGGGAGAAGAATGATGAGAGGAGACATTTAAAAGGCAGAGAAATTGAGGACAGTAGGACTTCTTCCAGGTTGTGTAAAGGGAATGTCAAGGGACCTAGAGGAGCTGCAGGTGGGGGCCGAGGTGGAATTTTGAGGGTTTCTTTGGACAAGCAGTCCAGCATGACCTCAGGAGGTGGGGAGGACCAAACAAAGCGAAAGAATCATGGTCCAAGAGGCAGAGGCATTCTCATCCTCCCCAGCACAACTGAGCTGACGGCTTCCCCAGAGCCTGGCCCTCGGCTGATGGGTGGGATGAGAGGTGGTGGTATGGGCCTAGGCAGAGGTAGAGGGGTTCGTGGAGGAAGTACAAGGCGACTTTGGGACCCCAATAACCCTGATAAAAAACCTGCACTAGCCAGCAGCCAGCAGTCCCAGCATTCACCTCTGCAAACATCACTATACCTGCATCAAGGAGGCTATGGTCCACTGCATTTCCTTGATACTGATGATGAGACAGCTGGGAGCCCCCCAGTTCGACAGGGCGAGAACTTCCAAAGCCATCAGGCTGCTGCCATGGCTTACTACAAATTCCAGAACTCAGACAACCCTTACGGTTACTCCTTGCCCACCAGTGCTACAAACACTCCTCCACGGTATGCCTTTCCATACCAGTTCCCATATCAAATACCTGGCTCCAATGGGATGTACCCAAATGCTGCCATGCCTTTCTATGGAGCATATGGGCAAAGTGGTCAGGGTTACCCTCCTGTAAGTGGCACTGCTATCGCCACAGAGGAAGCAGAGGTACAAACTAGAGGTGAGCTGGTCAAGATGCTTCGACTGGCTGACAGCCAGGAGCTCCAGCTCAGCAACCTCCTGTCCAGGGAACGTCTGAGCCCAGAAGGACTGGACAGAATGGCACAGTTGAGGGCTGAGCTACTGACCTTGTATGAACGAGTGATTCTAACAGACATCGAGTTCTCAGACTCTCAGAATTTGGACCAGGCACTTTGGAAGAATGTGTTTTATCAGGTCATTGAGAGATTCAGACAGCTTCTGAAGGACCAAGATTCAGATACAGCACCCCAGTTGAGGGCCATGCTGTTGACAATACTTGAAGAGGGGGCAATGTTCTTTGATACACTGCTGCAGAAGCTGCAAACTATATTCCAGTTTAAACTGGAAGACTACATGGATGGGATGGCAATCCGTGCAAGACCTCTGCGCAAGACGGTAAAGTATGCTCTGATCAGTGCCCAGCGCTGTATGATCTGTCAGGGAGACATCGCGAGGTACCGAGAGCAAGCCAGTGATTCGGCCAACTACGGCAAAGCACGCAGTTGGTACCTAAAAGCTCAGCAGATTGCTCCCAAAAATGGACGACCCTACAACCAGCTTGCATTGTTAGCAGTGTACACAAAGCGTAAGCTGGATGCTGTGTATTATTACATGCGTAGTCTGGCTGCCAGCAACCCAATCCTGACTGCAAAAGAGAGCCTGATGAGTCTGTTTGAGGAAGCCAAGCGTAAGGCTGAACAGATCGAGCGCAGGCGGAAGCAGGATTCAGAGGGAAGCGTATGCGGCCCACGGGGGCGAGGATGGAGTCGGGGCGAAGATGCCACCCGGCAGGAAATCTGGATTCGCCCCAGTGGGCATCCAGGAGTGCCATCCCGCACAGCGGGCAACGAATCGAGCAAAGACTCTGAGCAGGACGGAGGGCTGAGCTCACTGAACGCCAGCGATctCAATAAGAGATTTATCCTGAGTTTTCTCCACACACATGGAAAACTCTTTACTAAAGTTGGGATGGAGAGCTTCCCAGCCGTGGCTGGTCGTGTACTGCAGGAGTTCCGGGCCTTACTGCAGCATAGCCCGTCTCCTCTGGGCAGTACACGCATGCTGCAGATCATGACCATCAACATGTTTACCATTCATTATGCTCAGACCAGAGCCGAAAAGCAGGGAGAGACGCGTTCAGTACTGGAGGAACAGACCACGTCTCTGGGCTTGGCCATGTTTGGGCTACTGGTGCAGCGTTGTACTGATCTTCTGAAAGAAACCCCTGCTGAAGCCATCTCGCCAGACGAGCTGGATGAAAGCGATATGGTAGAAGAAGAGTCGATGGTTCGAGTGTCTGCTTTCTCTGCTGATCTGCGGGAGCTCCTGCCCAGTGTTAAAGTTTGGTCAGACTGGATGCTCGGCCACCCAGAGCAATGGAATCCCCCACCATACAGTGTAGATGGGAGTCCTGATGTATGGCAGTGCTTGGCTGAGCTGTGTAATGCTCTGGCTCGTGTGCATCACAGCGAAATTCCACTGTATAAGGCAGATGGTGACGGAGAGGGGGATGAGGAGCTCCGGCTATTAGTGCTCGAGGAGGACGGAATGCTGGCTGGATTCGTCCCCCTGCTGGCAGCTCCACAGGAGCCATGCTATATAGACccacagacagacactGCCATGGCATCCGACTGTAAGAGAGTGACCGTACTCAAGTACTTCCTGGAGGCTCTGTGTGGACAGGAAGAGCCACTGCTGGCCTTTAAAGGTGGAAAGTACATTTCAGTTGCAGTTCCTCCTGTTCCCAGCCAGCAGGTAGAGGACAAGAATGAGTCACAGGTCCACGAGCAGAACCAGGAGGACGACGTTATAGTGGAAGAGTCCTCTCTTTCTGCGTCAGAGGGAGATATGGATGAGGAGGTGGAGGGTGATGGAAGTGAGGATGACATCAAAGAGTTAAGAGCTAGACGTCATGCTCTAACCCATGAATTGGCACAGCAGCAGAAACGTAGAGACAAAATACAGGCTGTTCTGCAGACTGGAGGTCAGCTGGAGCTGGAGATCAGACCCTTCTATCTTGTCCCAGACACCAACGGCTTCATTGATCATCTGGAGGGGCTGAGGAAGCTACTGGCCTGTGGTTCTTATGTGCTGGTGGTCCCTCTGATCGTGATTACAGAGCTTGATGGCTTAGCAAAGGGGCAGGAGAGCCGGGATGGAGACTGTGTTGGTGTAGGTGGGGCAGCTCATGCCAAGATGGTGCAGGAGTGCGCTAAAGCAGCTGTGACTTTCCTGGAGAAGGGCTTCGAGGCGCGAGAGCCAGGTCTGAGAGCACTTACCAGCAGGGGAAATCAGCTGGAGTCCATCGCCTTCCGCAGTGAAGATACATCTGGACAAAAGGGCAACAATGATGATCTGATTCTTTCCTGCTGCCTGCATTACTGTCAAGACAAGGCTAAGGATTTCATGCCTGCTAATAGAGaaGGGCCGGTTCGACTGCGCAGGGAGGTGGTTCTCCTGACAGATGACCGGAACCTGCGTGTGAAGGCTCTAACTCGGAACGTCCCGGTTCGAGACATCCCCGCTTTCCTGAGCTGGGCTAAAGTGGGCTGAGTAAAGGAGGCCGGACGTCGCTGTAAAAACCGCTCAACTCCACTGCAATGGAGTGGAAAGCAAAGAAACACACAGcacagggggagagagagagatggtgtgtgtgtttgtgagagagagagagagagagagaggggacgGCAAGAAGCTTTTTATGTcagaccaacaaaaaaaaagcttagaaTGAGAAATGAAATCATTTCCTGAGAGATGAGCGTTTCTTTATCCCCTTAAAACCAGAACGCTTGGAGACCGGCAGAGGAGAGTTTGAGAAGGTGAGTCAGGCTGAGCTGAAAGGGGGGTCGCACCTGTTGGGTGCAGGGAATGGTTTTGAGGTGCAGTtgcaggtctgtgtgtgtgtgtataagagtgattgagagtgtgtgtgtgtgagtgtgtatgggAGAGAGTAACGCTGAAGGGCATTCTCAGTGTGCTGTGTCGTCTACTGTAGGTGTGCAGGCTAGAAACATTAAGCGTAAAGTAGTTCAGAGAGGAGATTCGGAGAGCGAATTGGTGGTTTGAGCTTGGGGAAGTCAGATCACCATGGTCGGTACTCTTCCTGTGGATGACTACTCCGGCACACTACAGGATATGAGCTTGTCATGAGCACAGGGCTGTAGTTGGGGCAGTGTGAGGGTTCTTTTTGGGCAGGGAGCTGTTCTTTGCCCTGTACAACCTTACCTGAGAGATCTGTTCATAGCCACAGCACAGCTTTAGTTGCTTTAGTTGGTTTCAGCTTGGTCAGCTTTGTTATTTGCAGTCTCAtctagcttttattttagttttagtttttttttttctttttttttaaggttgatTTGATCCATCTAAATGTTTGATAAGGACGTGTGGCTTGTTGTGGTGTGAGTTTGATTTGTTTATAAGAACAGCAGTGCTCTATCTCAATAGTAGCTGtgtaaaccccccccccccccaccttaAATGTAAGCTTAAATATAAACTACTTACTACAGATTTAacacatgctgctgctgctgcttcataGCTTTCCTATTTCTAAGGTTTAAGAACACAGACAACAAACAGTCGACATGCAGAATCAGAatgattgttttttgtttttttctttgctaatTCTGATCGCAGTAGGGCATTATTTAGTTTAAGCAGTGTGTTAGTTAATTTCTCATGATTAATAATAAGAGGTTTATCTCTCTACCCTGCATTTTTCACTTTCCTCTGATGTTTCATTATTGAAGCTCTAATACAGtatctgttataaaaaaaactgcaacaccccactataaaaacaaaacatacgTTTCTAttgattaatacattaatttacattgaTAACATGATAGTTTTTGTCGGATTGGATAACTATTTTCTTGTGAACAGTGTTCTAATCACATCTTAAAATATgatttgttgtgttgttttttcttgtgtttgtgtttttttgggtttcagacataatattgtaatatattgtcTTCCATAACGTGACTTTTTGCTGCTGCTTTTCTCAAAAACCAAATGCATGAGTTATAAAATGTGCAACATCAGCTTTAATGGGATCTGAAACTTTGATTTGCTTAACTCTGTTTTTGAGGCGTCACCTTCTACTGGTGTACTGATGTTACAAAATAAGAGCACTATATATCAGCGCATCATTTATAGCAGCAACTGATCACAGTTCATATTTGACACCATGGAGATTCTtcagtttaataaatgttttcagttCTCCTCTTGCCCTTAa

Function

NR:

description
telomerase-binding protein EST1A

GO: NA

KEGG:

id description
K11124 SMG6, EST1A; protein SMG6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229772.2 True 6617 mRNA 0.48 21 35846390 35873586

Neighbor

gene id symbol gene type direction distance location
LOC103045257 LOC108411116 coding downstream 35719 35806732 ~ 35810671 (-)
LOC103044945 gabrr3,gabrr3a,LOC107589257,LOC107697425,LOC107686176,LOC106603079,LOC106563567 coding downstream 172226 35638005 ~ 35674164 (-)
rhbdd2 NA coding downstream 294202 35542319 ~ 35552188 (-)
prr11 NA coding downstream 357885 35480295 ~ 35488505 (-)
smg8 smg8,LOC107686170,LOC107589184,LOC107577889 coding downstream 368618 35472086 ~ 35477772 (-)
ovca2 ovca2 coding upstream 32098 35905684 ~ 35942719 (-)
LOC111194994 atp6v0a1,LOC108444241,LOC107567567 coding upstream 372787 36246373 ~ 36253870 (-)
G181686 NA non-coding downstream 19294 35798717 ~ 35827096 (-)
G181660 NA non-coding downstream 53468 35744785 ~ 35792922 (-)
G181680 NA non-coding downstream 54281 35790216 ~ 35792109 (-)
G181675 NA non-coding downstream 65870 35779981 ~ 35780520 (-)
G181543 NA non-coding downstream 214335 35631033 ~ 35632055 (-)
G181714 NA non-coding upstream 42996 35916582 ~ 35916807 (-)
G181716 NA non-coding upstream 57021 35930607 ~ 35930948 (-)
G181735 NA non-coding upstream 332900 36206486 ~ 36209704 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other downstream 375601 35433232 ~ 35470789 (-)
LOC103033173 NA other downstream 1990758 33805240 ~ 33855632 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other downstream 3262047 32436325 ~ 32584343 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other downstream 3583792 32240179 ~ 32262598 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other downstream 3774466 31894202 ~ 32071924 (-)

Expression


Co-expression Network