LOC103038052 (zpld1,zpld1a,LOC103038052,LOC108276676,LOC107548885,LOC107693966)


Basic Information

Item Value
gene id LOC103038052
gene name zpld1,zpld1a,LOC103038052,LOC108276676,LOC107548885,LOC107693966
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 29646692 ~ 29669237 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231132.3
GATATACAGTAGGGCACATATGTGCACTGGGCGTTAATCCTTCAGCGGCTGCTCTGGACCGGAGAGCGGAGAAAGTGGGAGGTCAGAGTCAGAGGCGGAGGACAGGTGGGATAACGGCCCCAGCAGCCATCACTGGAGCTGGCTGGAGAAGTGCTGACTGAGGCAGGCCCAAAACAAAGCCTCTGAAAGCGTCCAGACGATCCCGGACCAGTCCCGTCCCGCGCCGGCCCACAGAAAGGCCGTCTCAGTCAGCGATCTGCTCAGCGCCGGGCCTGATGAAAAGATAATTCCCCCTGCGCAGACCTCATGCAGCGCGGGGGCTCGCTTTGCGAAGCGCTGACAGAGAGAGATCAAGTTAGAAAGGATATGAGTGGGAAACTTCAAAAAACCGCTCATGTTTCCGGACAGTGAAAGGATTTGTATAACACATTCACTTTTTGATGGACTTTCCCATGTTCCGCCGGACAGCCCTTTTTGTTGACGCCTCGGAAGAATGGGTCTCTTATGCTTGGTCATTTTTTTCTGCCAGGCCGAAGCCCATGTCTGGGCTCGTTTTGCAGGGATGCTGGGCAAGCTGAGGCCAGTCAGTCTCATGCCGGAGGAGGGAGCACATGGAGTACCGCTGACCACTCAGCTGCCAGGCAACCAGgtgCTGACATGGAACGTATATGTTTGATTCTTTTGCTGTTATATAAATTATTGATAGTCAAAGCCCAGTTCAATGGATTCAACTGTGATGCCAACTTTCATAGCCGTTTTCCTGCTGAGCGGGACATCAGTGTGTACTGCGGGGTGCAGACCATCACTCTGAAGATTAATTTCTGCCCGGTGCTTTTCTCTGGCTACACTGACACTGACCTGGCCTTGAACGGACGTCACGGTGATGCTCACTGCAGAGGGTTCATTAACAACAACACCTTCCCTACAGTGGTGCTGTTCAGCATCAGCCTGAGCACGCTGGAGGCCTGTGGAAACTCACTAGTGgtgTCCACGGCTCACGGGCCCAATGCCTATGGAAACCTCTCATTGGTGCAGATTGGGAGTATATCAGGCTACATTGATACACCTGACCCTCCAACCGTCATCAGCTATTTACCCGGCCTGCTGTATAAATTCAGCTGCAGCTACCCACTGGAGTACCTGGTCAACAACACACAGCTGGCTTCGTCTGCTGCTGCTATTTCAGTGAAGGACAGTAATGGTACATTCGTGAGCACACTGAACCTCCTGCTGTACAATGACTCCACGTACGTCCAGCATTTGTCAATTCCGATGGCTGGCCTCACTCTGAAGACTCGCGTCTTTGCTGCTGTGAAGGCCACTAACTTGGACAGAAGGTGGAATGTGCTGATGGATTACTGCTACACCACTCCCTCTGGGAATCCTAACGACCAGCTTCGATACGACCTCTTCTTTGGATGCGATAAGGACCCTCAGACGACCGTGTTTGAGAACGGGAAGAGCCAGATGGGTCGATTCTCCTTTGAGGTGTTCCGCTTTGTCAAACACAAGAACCAGAAAATGTCCACGGTTTTCCTGCACTGCGTGACCAAACTGTGCCGGTCTGACGACTGTCCCATGCTCATGCCGATCTGTGGGAAGCGTAAGAGAAGGGACGTGACAGAACACTCTGACTCTAATGCTGCATCTGGGAATGCAGTAATAACTGCAGGACCAATCATTACCAGGAGCGAAGAAACTCCAACCAATAACTCTCAGCTAGctcAGCTAAACAGCGCTCCGTTCAGGATGAACTCCATTACGAGTGCGCTGGTTTCAGGCATCATCATCCTCGCTGTGATGAGCATGTGTTTCTTCGTCTTTTCGATGACGCTCCTGAAGGGGAAGCAGCCTCTGCCATCGTCACTGTCAGGAGCCCACAATCCTTCTTTCAGctaaacacccacacactcatatacaccaCAAGCGTTACAAGCCACAATCTGGTGCGTTAGGTAGGATTTTCACAAGATTTTATAAAGAATTTATGGTTATCAGTTACAGATTGGAGCTACAGCCTCTCAAAAATAATTCATACTCTGATTTAGCGTTATtctgggtaacactttctatgtcTAATGTTATTATGTCATGTTAAAAGACtctataaaacactttttatcatattaaataaatgttatctGTCAATACCAAGATACTCAATCTCCCAGCTTGCCTGCAGCATTATGACTAGGGTAACTAAGCtgcttataaacacacactgatcgattctatagttacttacattatcagtaaaagtttgg
>XM_022680704.1
GATATACAGTAGGGCACATATGTGCACTGGGCGTTAATCCTTCAGCGGCTGCTCTGGACCGGAGAGCGGAGAAAGTGGGAGGTCAGAGTCAGAGGCGGAGGACAGGTGGGATAACGGCCCCAGCAGCCATCACTGGAGCTGGCTGGAGAAGTGCTGACTGAGGCAGGCCCAAAACAAAGCCTCTGAAAGCGTCCAGACGATCCCGGACCAGTCCCGTCCCGCGCCGGCCCACAGAAAGGCCGTCTCAGTCAGCGATCTGCTCAGCGCCGGGCCTGATGAAAAGATAATTCCCCCTGCGCAGACCTCATGCAGCGCGGGGGCTCGCTTTGCGAAGCGCTGACAGAGAGAGATCAAGTTAGAAAGGATATGAGTGGGAAACTTCAAAAAACCGCTCATGTTTCCGGACAGTGAAAGGATTTGTATAACACATTCACTTTTTGATGGACTTTCCCATGTTCCGCCGGACAGCCCTTTTTGTTGACGCCTCGGAAGAATGGGTCTCTTATGCTTGGTCATTTTTTTCTGCCAGGCCGAAGCCCATGTCTGGGCTCGTTTTGCAGGGATGCTGGGCAAGCTGAGGCCAGTCAGTCTCATGCCGGAGGAGGGAGCACATGGAGTACCGCTGACCACTCAGCTGCCAGGCAACCAGgtgCTGACATGGAACGTATATGTTTGATTCTTTTGCTGTTATATAAATTATTGATAGTCAAAGCCCAGTTCAATGGATTCAACTGTGATGCCAACTTTCATAGCCGTTTTCCTGCTGAGCGGGACATCAGTGTGTACTGCGGGGTGCAGACCATCACTCTGAAGATTAATTTCTGCCCGGTGCTTTTCTCTGGCTACACTGACACTGACCTGGCCTTGAACGGACGTCACGGTGATGCTCACTGCAGAGGGTTCATTAACAACAACACCTTCCCTACAGTGGTGCTGTTCAGCATCAGCCTGAGCACGCTGGAGGCCTGTGGAAACTCACTAGTGgtgTCCACGGCTCACGGGCCCAATGCCTATGGAAACCTCTCATTGGTGCAGATTGGGAGTATATCAGGCTACATTGATACACCTGACCCTCCAACCGTCATCAGCTATTTACCCGGCCTGCTGTATAAATTCAGCTGCAGCTACCCACTGGAGTACCTGGTCAACAACACACAGCTGGCTTCGTCTGCTGCTGCTATTTCAGTGAAGGACAGTAATGGTACATTCGTGAGCACACTGAACCTCCTGCTGTACAATGACTCCACGTACGTCCAGCATTTGTCAATTCCGATGGCTGGCCTCACTCTGAAGACTCGCGTCTTTGCTGCTGTGAAGGCCACTAACTTGGACAGAAGGTGGAATGTGCTGATGGATTACTGCTACACCACTCCCTCTGGGAATCCTAACGACCAGCTTCGATACGACCTCTTCTTTGGCAGATGCGATAAGGACCCTCAGACGACCGTGTTTGAGAACGGGAAGAGCCAGATGGGTCGATTCTCCTTTGAGGTGTTCCGCTTTGTCAAACACAAGAACCAGAAAATGTCCACGGTTTTCCTGCACTGCGTGACCAAACTGTGCCGGTCTGACGACTGTCCCATGCTCATGCCGATCTGTGGGAAGCGTAAGAGAAGGGACGTGACAGAACACTCTGACTCTAATGCTGCATCTGGGAATGCAGTAATAACTGCAGGACCAATCATTACCAGGAGCGAAGAAACTCCAACCAATAACTCTCAGCTAGctcAGCTAAACAGCGCTCCGTTCAGGATGAACTCCATTACGAGTGCGCTGGTTTCAGGCATCATCATCCTCGCTGTGATGAGCATGTGTTTCTTCGTCTTTTCGATGACGCTCCTGAAGGGGAAGCAGCCTCTGCCATCGTCACTGTCAGGAGCCCACAATCCTTCTTTCAGctaaacacccacacactcatatacaccaCAAGCGTTACAAGCCACAATCTGGTGCGTTAGGTAGGATTTTCACAAGATTTTATAAAGAATTTATGGTTATCAGTTACAGATTGGAGCTACAGCCTCTCAAAAATAATTCATACTCTGATTTAGCGTTATtctgggtaacactttctatgtcTAATGTTATTATGTCATGTTAAAAGACtctataaaacactttttatcatattaaataaatgttatctGTCAATACCAAGATACTCAATCTCCCAGCTTGCCTGCAGCATTATGACTAGGGTAACTAAGCtgcttataaacacacactgatcgattctatagttacttacattatcagtaaaagtttgg

Function

symbol description
zpld1a Predicted to be an extracellular matrix structural constituent. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and extracellular space. Is expressed in anterior crista; lateral crista; and posterior crista. Orthologous to human ZPLD1 (zona pellucida like domain containing 1).
zpld1 Predicted to be an extracellular matrix structural constituent. Predicted to be located in cytoplasmic vesicle membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and extracellular space.

NR:

description
zona pellucida-like domain-containing protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231132.3 False 2264 mRNA 0.49 11 29646692 29669237
XM_022680704.1 True 2267 mRNA 0.49 11 29646692 29669237

Neighbor

gene id symbol gene type direction distance location
ccdc83 NA coding upstream 73447 29562544 ~ 29573245 (+)
fez1 fez1,LOC107691643,LOC107751387 coding upstream 89530 29528314 ~ 29557162 (+)
LOC103034698 v26bl,LOC108423787,LOC107588734,LOC107751386,LOC107691644,LOC105024202 coding upstream 129746 29510098 ~ 29516946 (+)
esam NA coding upstream 143524 29428891 ~ 29503168 (+)
msantd2 msantd2,LOC107577222,LOC107588693 coding upstream 224785 29415823 ~ 29421907 (+)
LOC103038373 NA coding downstream 13993 29683230 ~ 29691495 (+)
LOC103038990 NA coding downstream 32125 29701362 ~ 29717879 (+)
alcam NA coding downstream 463957 30133194 ~ 30268718 (+)
bbx bbx coding downstream 834808 30504045 ~ 30560931 (+)
LOC103035352 NA coding downstream 922621 30591858 ~ 30615583 (+)
LOC111195086 NA non-coding upstream 5940 29628491 ~ 29640752 (+)
G179901 NA non-coding upstream 140715 29505553 ~ 29505977 (+)
LOC111195084 NA non-coding upstream 341295 29303039 ~ 29305397 (+)
G179872 NA non-coding upstream 345355 29300587 ~ 29301337 (+)
G179820 NA non-coding upstream 713552 28915333 ~ 28933140 (+)
G179985 NA non-coding downstream 84994 29754231 ~ 29754625 (+)
G179989 NA non-coding downstream 126484 29795721 ~ 29796232 (+)
G179992 NA non-coding downstream 153690 29822927 ~ 29823261 (+)
G180022 NA non-coding downstream 457993 30127230 ~ 30127650 (+)
G180026 NA non-coding downstream 491995 30161232 ~ 30162112 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 2121251 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 2730348 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 2767609 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 4389223 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 5192070 24447792 ~ 24454622 (+)
G180235 erg other downstream 1470107 31139344 ~ 31151095 (+)
G180266 NA other downstream 1763961 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 2595761 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 3381005 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 4503687 34172924 ~ 34328970 (+)

Expression


Co-expression Network