LOC103038373


Basic Information

Item Value
gene id LOC103038373
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 29683230 ~ 29691495 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231133.2
CAATCCCACCAAGGAATATGGGCTATAAAAGTGTTTCGGCAAGCTCTGATAGTACTGAAAAGCTGAGGCTAACCAAGCATTAAAACAAGGATGAAGTATCTGATGCAAGGCTCAAGCTCAACCAAGGGTTGGAAAATGCTTCTCCAGCTTTTCCTAGTCTCCATCACTTTGAATGCAGTTAGCAGTCAGTTACAGGCAACGACATCGGCGAACTGTACAGGGTTTTTGAGAAGACCAGAGTACACTGACATTGCAGTGGATTGCAACACAAACTCCATTAGCCTGGCCATACAGCTCTGTCCGGCTGTCTACGCTGGCTTCAACGAGTCTCAACTTTTCCTCAACAACGTCATGGACGACCCTAGCTGCAGAGGCACCGTGGACATGACAGTCAGCCCTCCTCTCCTCCGCTACACCTTCCCTATTAATATGACCAGCGCCTGTGGAAGCATCTTCACGACCACCAGCGCTCCAGGCACCGGAATATTCTCCGACTTCTCCAACATCCAGACGGTGAACATCAGTGGTGTGGTGAAATCATTCGACACCACAAGCAGCGTAGTGACCTACAACACTGAGCTGAAATACTACTTCTCATGTGCCTATCCTCTGGAGTACCTGCTTAACAACACCCAGGTCGATGTGTCGTCCTCCGCCATCGCAGTGAAGGACAAGAACGGTAGCTTCATCAGCACACTGAGCATCAAGCTGTACAGCGACCAGAACTACACCATGCCCTTGTCCATTCCTACTCAGGGCATTGAGCTGAAGACTAAAGTCTACGTTATGGTCCAGGCCATCAACCTCACCACTCAGTACTATGTGATGCTGGACAGATGCTATGCTTCAGTGTCCCGTTTCCCAAACAACTCCACCTTCTTCAATCTCTTTGTTGGGTGCTACAAAGATCAGATGACCACCATGCATGAGAACGGGGTAAGTCAGAAGGCTCGCTTTTCCTTCCCAGCCTTCAAATTCATGGAGCAACAGAACCAAACCATCTCAAGATACTACCTGCACTGCATCACCCGACTGTGCGAAATCTCCACCTGCAATAACTTTCTGTCCTGTCCCAACGGCAGACGAAGAAGAGACGTGGACACTACCCCCGCCACTTTGGAAAACGGACTCACAAACTTCACCACTCTAACCTCCCCCCTCATCATCACCCGATCTGACGCTGctGCATCATCGAAAGAGCAAGCTCTGACCGGCAGCAGCTCTCGTTCAGACTCGTCTGTGGGACTTGGCGTGGCTGTGGGCATCCTGGCGTTCGTCTGTGTCGGCATTATTGGAGCAGCTGTTATCATCTACAAGAAGCTCCTTGCTTCTGGCGGCGGCAAAATCCTCCGCAGCTAAATCTCCTACAGACTGCTGTGGCTCTGCTCCATCTCCGAGAGAGGGCAGCTGGCGGCCCGTCCGTATCCGGCCAAACTATCTTACTTGATTTCTATAGTACAACTTGGTGAATGTGCAGCGTCTGTAGCCAATGAGAATGTAAATATCAGTGAGGTTTAGTGAAGGAAGAAGGTAACTCGTCACCGGCTTTGGTTCTATCACTTTTAAACGTTTTACACAGCGGCAGGAAGAGGTTCAACTCTTAAGGCGGGGCTTTGAGAGATTTGACTTATGGGTAAaaaggtataaaaatatatggcaCTATAGTTTATAGATAGGGGGCAGgaatgctttgtttttttttttttgtttgtttgagatTTTAAGTAGAATCTATTCAAATtgaaagtaatttattttattttgacacacacatatatataataattgtaataatactTCTATACATTTAGCCCCTTCCCAAAGATCTGTTGATATAGATCATCCACAGAAAGTGTCATTTGTTACTTTTGTTGGAGATCTGATGAATGATATGATGCAAAATGCCACGTATCAAGTATTGTATGAAGTATTGatcatttttaaccattttaaactTGAAGTAGTCAGCTCAAATTGCCAAATTGACACTTTAGACACTTCAAACCAGACAAAAACTAATTTCTTCTAATGCATGCAATAGAACTCACTATCTGGGGTAATTAGCACaataaatgcaaatgcaaatcaAAGGGCTTTGAAGGAATTATGCCAAGAAAGGATGAAAAGTTCTCCTGGTTAAATGTTTGAAATGTACTTGCACTTTGTATAAGTTCTTCATTATGACTAATTACAAAATACTACCTAAATTGCACATGTATGTTTGTGATTCATTCACTAATGCATGCACTATTATGAATAAACATCATCTAACTATTAAAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231133.2 True 2283 mRNA 0.44 11 29683230 29691495

Neighbor

gene id symbol gene type direction distance location
LOC103038052 zpld1,zpld1a,LOC103038052,LOC108276676,LOC107548885,LOC107693966 coding upstream 13993 29646692 ~ 29669237 (+)
ccdc83 NA coding upstream 109985 29562544 ~ 29573245 (+)
fez1 fez1,LOC107691643,LOC107751387 coding upstream 126068 29528314 ~ 29557162 (+)
LOC103034698 v26bl,LOC108423787,LOC107588734,LOC107751386,LOC107691644,LOC105024202 coding upstream 166284 29510098 ~ 29516946 (+)
esam NA coding upstream 180062 29428891 ~ 29503168 (+)
LOC103038990 NA coding downstream 9867 29701362 ~ 29717879 (+)
alcam NA coding downstream 441699 30133194 ~ 30268718 (+)
bbx bbx coding downstream 812550 30504045 ~ 30560931 (+)
LOC103035352 NA coding downstream 900363 30591858 ~ 30615583 (+)
LOC107196917 NA coding downstream 926105 30617600 ~ 30628614 (+)
LOC111195086 NA non-coding upstream 42478 29628491 ~ 29640752 (+)
G179901 NA non-coding upstream 177253 29505553 ~ 29505977 (+)
LOC111195084 NA non-coding upstream 377833 29303039 ~ 29305397 (+)
G179872 NA non-coding upstream 381893 29300587 ~ 29301337 (+)
G179820 NA non-coding upstream 750090 28915333 ~ 28933140 (+)
G179985 NA non-coding downstream 62736 29754231 ~ 29754625 (+)
G179989 NA non-coding downstream 104226 29795721 ~ 29796232 (+)
G179992 NA non-coding downstream 131432 29822927 ~ 29823261 (+)
G180022 NA non-coding downstream 435735 30127230 ~ 30127650 (+)
G180026 NA non-coding downstream 469737 30161232 ~ 30162112 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 2157789 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 2766886 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 2804147 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 4425761 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 5228608 24447792 ~ 24454622 (+)
G180235 erg other downstream 1447849 31139344 ~ 31151095 (+)
G180266 NA other downstream 1741703 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 2573503 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 3358747 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 4481429 34172924 ~ 34328970 (+)

Expression


Co-expression Network