ccdc83


Basic Information

Item Value
gene id ccdc83
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 29562544 ~ 29573245 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231134.3
GCAAACCTGGGTATATGTTCAGGCaaaaacaacagagagagagagagactcttttACAGCGggaatattattttcattttaagttaGTCATACATCAGTGATTTAAACAAAGAAACggttaaaatgtgatttaaatgttactaataactgaacttttttttttttttttttacatttttatagatTATATTGGACTGAAAATTAGGAAGAGTAGACCTCAAGAAGACAAAATGACTGTGGCAGAGGCGTATATACAATTTCAAATTCAGGTTATAGGAGAAGAAACTGAAGAGTTCAGGAAGATAATAACTGAACTAGAAACTGACAACAGAAGACTTACTGAATTGCTGGACCAGTTGAGAGAAGAGCATCTGAATAGTGTGTGTAAGCTTCATGAGCAAGCAAAGAAGCAGGAGAAGGAGCTACAGCAAACTGTGTTAGTGAGCAAGGAGCAGCTGAAGCAGGCCCAGAATGACAACCTAAAGGTCACCCATAAGGAGGAGGAAAGGATGGcagagtTTCACAGGCAGCTGGATGACCTGGAGGTGCAGAGTAAGCAGCACCTAGAAGAGCAGCAGTATTGGCTTCAGTATAAGAATGTGGACAGAATTAAGTATCAGCAGCGAATAGACAACCTTCAGTCAGAACTCATCTCTGAACATAAGAAACTTGAGGAAAGATTAGAAATCTGTAGACACTGTCTGGAGGCCACCTTCAGTGAACTCGACAGAAAGGCATCTCAGCTTATGAATAACAAGAAACAACTGGCTATAAAGAATGCAGTAAAAGAGCTGGATAATTTCAGGTGcaaggagatcaaagagaacagCCTCCTTAAAGAAGAGCTTGCTCTCTACCGTAAAGAAGTCTCTGTAGTGGAAGCAGATATGAGAAGGATAGAGGAGGAGGACTTAGAGCACGTGAAGCAGCTTTTTGATGATCTGCCAATTCCAAGgaATGTGTCTCCCACGCAGTTGGTCTCCTTTAGTCTGGAACACAGTGTTCAGAGCCTCAGCCTCACAGAGACAGCAGAACCGGGAAGCGCCCCCCTTCCTCTGTCTGACTCCACCGCGGAAGCTGGGGGGGCAAAGCACCAGCAGCAGGCTGTGGAATTGGAGAAAGATGAAACAGATCCCAGCTGCAAgccctcctgctcctcctctccctgtgaCCTTACCCTGCCCCTCTCTGGCAGCCGGAACGACCCCTGGGAGTCAGAGCATCCATGCCtccaggagcagcagcagctgctgaGAGTGGCAGGCCAGGCCATGACTCTACATCCGTTAATCAACGACCATCAGGATTTAAATACCTCAACTTCCCAGTCTCTTTTCACACGCATCATCCGCGACAGGTTTCAATAAGCATTTACACAAAGTTAAACCCATTAAAAATGGCACAACTGCATTTTTGGCAAATGCAACAACTTTTCTTCGTAATCTTTGGTGCATAAAGGCCCAattccatttctcttttgtaccacTACCCCTTAAAGCAGAGTTATAAGGGTAaagggtgaaatcctccccctaagaatcGGGACAAGCCATACAGGTATAGCTATAGAAGTAAAGTTCAGTTCAGTAacctaaagttcagtaacctagctgctgactaactagttaactttagggcatcatGTGTCTTGAGGAATGGGGGCAAACagtgcagcaattaattattatcatCCAATATTGTTAATTCCTCTCTGATTGCCAACTGATTTatcttttattaacttttatttttatgttccaccttaaatgttgcagcCTCTGCCAatttgttgcaccatttaagctGGAATGGTCataatttatacaaaattaAATGCTTTATTCAAGAGTTTCTTTAGTCGCTTGTGCCGCCATATTGCCAATAAATCTCTTAGCTCTCTGTTgtgagtgtgcctctgaaaagtCAACGTTTGAAGGGCCATGTAGccctaacaagaatcgggacacccccAGGGAGTGCACAAATATGCAACGGCACCTCATCACCTCTAGCTAATTTTGTGAATAAACAAACATTAGGAGACAAATTCACTTTTGTGGAAGCTGCTCTTTTATTTGAAAATCAATCAAATTCTGctcacatacattttttttatatatataaacaaaaatagaatCTGCAGGGACAAATGCAGCAAATATGCTAAATCAATGGATAGAATCACCTTCATATTGGGACCATCCTTCACATGCTCCTCTACTGGACAGGGTCTGGGATTATTTACAGAAAGCACCGATCAACAGTGCTTCTCCATCTCCTGTTCTACTGCATCTACTTCTAATTTACAAAGACACTACCGAACCCACCCTGATGATGGCGACCCGTAACACCTTCACACGCATGCCTGTCTGTGCTTACGCGTGTGCCGTTCCCTGTGCTCCTGCTTCAGCAAAGGGTGCCCTCTAGTGCCTGTGTAGGGAAAGATGGCCCAAGCATGAAGGCAACTCCGGACATTCAGGTTGGAAAAGGCAGCCGTATAATtcgtcaatgtaaaataatgacaTGCCAAGCGTAAAGCGACACAGCTCCTCCCCGATGCAGCGCTGCAGAATCACAAATGTAGTGATGCTAGTCTGATAAATGGTTCCCTTgccaaaaacaaaggaaaaaataaacaa

Function

GO:

id name namespace
GO:0030031 cell projection assembly biological_process

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231134.3 True 2639 mRNA 0.43 10 29562544 29573245

Neighbor

gene id symbol gene type direction distance location
fez1 fez1,LOC107691643,LOC107751387 coding upstream 5382 29528314 ~ 29557162 (+)
LOC103034698 v26bl,LOC108423787,LOC107588734,LOC107751386,LOC107691644,LOC105024202 coding upstream 45598 29510098 ~ 29516946 (+)
esam NA coding upstream 59376 29428891 ~ 29503168 (+)
msantd2 msantd2,LOC107577222,LOC107588693 coding upstream 140637 29415823 ~ 29421907 (+)
robo4 robo4 coding upstream 413734 29108308 ~ 29148810 (+)
LOC103038052 zpld1,zpld1a,LOC103038052,LOC108276676,LOC107548885,LOC107693966 coding downstream 73447 29646692 ~ 29669237 (+)
LOC103038373 NA coding downstream 109985 29683230 ~ 29691495 (+)
LOC103038990 NA coding downstream 128117 29701362 ~ 29717879 (+)
alcam NA coding downstream 559949 30133194 ~ 30268718 (+)
bbx bbx coding downstream 930800 30504045 ~ 30560931 (+)
G179901 NA non-coding upstream 56567 29505553 ~ 29505977 (+)
LOC111195084 NA non-coding upstream 257147 29303039 ~ 29305397 (+)
G179872 NA non-coding upstream 261207 29300587 ~ 29301337 (+)
G179820 NA non-coding upstream 629404 28915333 ~ 28933140 (+)
G179819 NA non-coding upstream 650091 28912175 ~ 28912453 (+)
LOC111195086 NA non-coding downstream 55246 29628491 ~ 29640752 (+)
G179985 NA non-coding downstream 180986 29754231 ~ 29754625 (+)
G179989 NA non-coding downstream 222476 29795721 ~ 29796232 (+)
G179992 NA non-coding downstream 249682 29822927 ~ 29823261 (+)
G180022 NA non-coding downstream 553985 30127230 ~ 30127650 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 2037103 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 2646200 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 2683461 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 4305075 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 5107922 24447792 ~ 24454622 (+)
G180235 erg other downstream 1566099 31139344 ~ 31151095 (+)
G180266 NA other downstream 1859953 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 2691753 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 3476997 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 4599679 34172924 ~ 34328970 (+)

Expression


Co-expression Network