LOC103022370 (LOC103022370)


Basic Information

Item Value
gene id LOC103022370
gene name LOC103022370
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 11081892 ~ 11084647 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231161.3
CCTTTGTTAAGAGTTTTTACTCAATCAGCTTGGTAAAAGTAGTCTTTCCAACTTTTGTCAAGTTGAGGTTTTTTCACAGTGTAGTCACTATATGAGTCATCTAGCCAGAATGAACAAGACAGAGCAAAATCAATATGAACTTGAGTTCACTGTGTACTTTTGATTTGTACTGTCATTTCCTGTATTATCAAAGATAAACAggcaaaatatatttacttgCTGTTACTAATTAGCACTGACCGTGCTGACTTACTGCCTTACAAAACATGGTGTGTGAAGTGAGTGTATAAAAGTAAGGGAGGGTGTAAAGTGAGTGTATAAAAGGGAGTGAGTGTGTAAAGTGAGTGTataacaggaagtgagtgtATAGAAGGTAACCAGTGAGAGATTCTTTGAACTGTATATCATTTAGAATGAGGGTCAGTGTAGTGCTGCTTTTATTTGGCTTAACTCAATTCCAGCTCATTAAAGGTGATGAGCAGCTTGCAGTGGAGGAAGTAGAGGCTGGATCAGGCAGGCTTCAGACCAAAAGCTATGGGGAAGGGTCAGGCGTTCTTGCCGACCAAGCCACCGTTCAGTCTGATGTGTCGGCTGAGCTGAGACAGCTGAGGGACATGGTTGTGGAACAGAAGGTGAAGCTCCAGCAGATTGAAGAGCTGAAGAAAGAAAACGCAGcacttgAGCAAAGGTTGGCCTTCACTGAacttgaaataaaatcactgagaGAGGAGAAAACAAACACTCCAAAGGTGGCGTTCTCGTTTGGTACAGGCATATCTGGCTCCCACGGGCCTTTGAGCACAGACTCAATTCTGGTTCTCAATAGAGAAATCACAAACATTGGAAATGCTTTCAGTCCAATAACGGgtgttttcacTGCACCAGTGAGAGGAGTCTACTACTTCAGATACACCATGTCTGGTCACAGCAGTGCACACTGGACAACTGTACGTCTGATGAAAAATCAGCGATCAATAGTAGTTGCAACAAAACCTCCAAAAGGAACTCATGACTACGCCGCCAGTGGTGCAACCCTGCTTCTGGAGAAAGGAGACCTTGTTTATCTCAGGCTTCCAGCTAATTCTCAGTTTTGGGACGATCAAAACaatcacttcagtttcagtgGCTTTCTGCTCTTTAccatgtaaaatattttgactagttaagaaaaagagaaagcacAACTTCACATGCAGATTGCAGTATGTAACAGATGTTTTTGGttacagggaaaaaaaatcatatcagcAGTAAAGAGAGATATTTCACACTGAATTATCTTAATGTTGTAAAACAATAAAGTTCAGACTTTAGTCtaatctgttattaaaaca

Function

NR:

description
complement C1q-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231161.3 True 1334 mRNA 0.41 4 11081892 11084647

Neighbor

gene id symbol gene type direction distance location
LOC103029503 NA coding upstream 62460 10925074 ~ 11019432 (+)
LOC111195029 NA coding upstream 78995 10999496 ~ 11002897 (+)
LOC107197471 NA coding upstream 243314 10830728 ~ 10838578 (+)
LOC111195105 NA coding upstream 251843 10826422 ~ 10830049 (+)
LOC103021388 LOC105909655,LOC105909654,LOC105905981,LOC105894871,LOC108276796,LOC105909651,LOC108276799,LOC108276792 coding upstream 255640 10821523 ~ 10826252 (+)
LOC103029829 NA coding downstream 29168 11113815 ~ 11125744 (+)
LOC103030157 NA coding downstream 70303 11154950 ~ 11158188 (+)
LOC103024145 kcnip1b,LOC103024145,LOC108444575,LOC107720696,LOC107552061,LOC102788752,LOC103363037,LOC107742366,LOC107676032,LOC107586147 coding downstream 165728 11250375 ~ 11322335 (+)
LOC103023833 LOC107678029 coding downstream 240241 11324888 ~ 11334033 (+)
LOC103027020 nlgn2b,LOC108443341,LOC107678031,LOC107554306,LOC107720555,LOC101475673,LOC102787387 coding downstream 665566 11750213 ~ 11865916 (+)
G174813 NA non-coding upstream 405891 10675716 ~ 10676001 (+)
G174812 NA non-coding upstream 410721 10670898 ~ 10671171 (+)
G174811 NA non-coding upstream 414712 10666950 ~ 10667180 (+)
G174810 NA non-coding upstream 416464 10665077 ~ 10665428 (+)
G174809 LOC103034963,LOC108437818,LOC108276546 non-coding upstream 418398 10661290 ~ 10663494 (+)
G174930 NA non-coding downstream 3072 11087719 ~ 11088839 (+)
LOC103022678 NA non-coding downstream 9070 11093717 ~ 11095900 (+)
G174944 NA non-coding downstream 52902 11137549 ~ 11137957 (+)
G174964 NA non-coding downstream 105834 11190481 ~ 11265122 (+)
G174983 NA non-coding downstream 316746 11401393 ~ 11401613 (+)
G174874 LOC108437803 other upstream 62474 10832168 ~ 11019418 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 450127 10621028 ~ 10631765 (+)
rexo2 NA other upstream 1928759 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 2529282 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 2915230 8149119 ~ 8166662 (+)
G174994 NA other downstream 345224 11429871 ~ 11436530 (+)
G175108 NA other downstream 824225 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 1106709 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 1439494 12524141 ~ 12540201 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 1654856 12739503 ~ 12745053 (+)

Expression


Co-expression Network