stoml2 (stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216)


Basic Information

Item Value
gene id stoml2
gene name stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 15780555 ~ 15790644 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231986.3
TGTGAGCGGCGGTGAGTGGTTCTCAGCGGCTCCAGAGAGGAAGAGCAGCAGGCGGGTCACGCTGGAGCTGCGGGTTGGAAAGGTTGCGGGTTAGTTTCATCATTTTTACTAATTCAGAGATCAGAGAAACCTGTGAGGAACACTGAGGAACCCGTGAGGAATCTGGGCAGGCTGAGAACATGCTGAGGAGCGTGGTGTGGAGGACTGGCAGTGCTCTGTTAAAGCACTCTCGACAGAACGTACCAGTTCTATGGGGGACGCGGGCTCAGCAGCGCTGGGCTTCCAGCCTCCCCATGAATACGGTGGTTCTCTTCGTACCGCAGCAGGAGGCCTGGGTGGTGGAGAGGATGGGGCGCTTCCACCGGATTCTTGAGCCAGGGCTTAACTTCCTAATCCCTGTATTGGACAGAATCAGGTACGTACAGAGCCTGAAGGAGATAGTGATAGATGTTCCAGAACAGTCTGCTGTATCTCTTGATAACGTGACTCTCCAAATAGATGGAGTTTTATACCTCAGGATACTCGACCCCTTTAAAGCCAGTTATGGAGTGGAGGATCCAGAGTATGCTGTAACTCAGCTGGCTCAGACTACTATGAGATCAGAATTGGGAAAGCTCACTCTGGATAAAGTCTTCAGGGAGCGAGAGTCCCTCAATTCGAACATTGTACACTCCATCAACCAGGCGGCGGATGAGTGGGGGATTCGCTGCCTCCGATACGAGATCAAGGACATTCACGTTCCCCCACGGGTTAAAGAGTCCATGCAGATGCAGGTGGAAGCAGAGCGGAGAAAGAGAGCCACGGTTCTGGAATCTGAGGGAACGAGGGAGGCGGCCATAAACGTGGCAGAAGGACGCAAGCAGGCCCAGATTCTGGCTTCTGAGGCCGAGAAAGCAGAACGGATCAACAAAGCTGCAGGTGAAGCAAATGCTGTGTTGGCCAAAGCAGAAGCGAAAGCGAAGGCCATTCGTCTGCTGTCAGCTGCTCTGACCCTGCAGAATGGAGATGCAGCAGCGTCCCTCAGTGTAGCGGAGCAGTACGTCACCGCCTTCTCCAGCCTGGCCAAGGAGTCAAACACCATCATCCTGCCCTCAAACACAGGAGACATCTCCAGTATGGTCACACAGGCCATGGCTATTTACGGGAGTTTAGCCAAGACGCAGTCTGCAAAAGCCCTGGAGAACGTGAGCTCCACAACTCCAGACTTTCAAGCAGAGGAGAGTTTATTTCCTGAACCTCCGGCACCTCAGTCCACCTCCAGCTCCTAGATCACACCTTCCAACACAAAGTGACACACAACCTCAGATACAGGACAGGACTGACCCGTACCGCCCATGAGGAGATATTCTCATCTGCAGAATGTCCTCAGGAGGACATGAGAGCCATGAACACCACCCTGAAATGCTGGCTATAGATGAGAGATGACAGAGAAAGGATTAAAAAAGTTATAACAGTGACTTTTTTCCACTGGAAAGCTTGATATCtagagttttttttcccctgtgtgtgtttctctttttttgtactattttctTTTGGAAAAAGTTAAGTTGCTGCAATTTTCCCTCCACTTCAAATCCAGATTGTTTGCTTATTTACAGATTTGCAAAATTTTTTCCCAATATTGTAAGACTCAATAACTATTTTGGGCCTCATTTTCTATAAATTAAAGCACTTATGTTTCTTTTATGTGTATATTATCATTGTCACAcattgagtgtgtgtttctttgcATTGAAAAATCAGATAATTCTAATTAAATTACTGCACTTATCTGattatacaaatataaacataatcatATAAACAGCATTAACCaatttagattatattttagagtaaagtctaaaagtctgattATGATATCAGATAAAGGAAGCTATATTTTAGCTCAGTCATCAGATTTCAGTTTATGTATACTCTTACGTTGAGTATTCTGGGATGGTTTAGTTACTTGATGTTTAGTTCATGTCTAATTCTGGGAGTTTATTGGCTAGTTGCAAAGtgaaaatctgattactgaccTATTCATAGAAACTTTTCCCAAAACAAAGTGTTTCCCATCATTTGATTACCTAAATTCATGCAAACACACGCATATAAACACACTCAATCTTGCGTCTCcatgtttgctgtttttttttttactttttaacaatGTGAATACcttgtgtaaaatatttgttaacctggaattttggagaaaacgATTATTTTGTGTGACAAcgataatatattaaatttatcTGGTTTGAATGGAAGCTGTTGTCGCCCAGTTGTTGGCCTTTTTTATTGCTGGTTTTTGTTTAGGGCCTCAAAAAGTAAGAATAAATATAGTAAGAATAATAAACCTCTTGTCAACAGTGTCATATATGTGTATCCTTTTTAGTATGTCTGCTTttggtttctttgttttttgttttgttaaaatggTACTGGGTAACATGCAGTAGCATTTT
>XR_002651445.1
TGTGAGCGGCGGTGAGTGGTTCTCAGCGGCTCCAGAGAGGAAGAGCAGCAGGCGGGTCACGCTGGAGCTGCGGGTTGGAAAGGTTGCGGGTTAGTTTCATCATTTTTACTAATTCAGAGATCAGAGAAACCTGTGAGGAACACTGAGGAACCCGTGAGGAATCTGGGCAGGCTGAGAACATGCTGAGGAGCGTGGTGTGGAGGACTGGCAGTGCTCTGTTAAAGCACTCTCGACAGAACGTACCAGTTCTATGGGGGACGCGGGCTCAGCAGCGCTGGGCTTCCAGCCTCCCCATGAATACGGTGGTTCTCTTCGTACCGCAGCAGGAGGCCTGGGTGGTGGAGAGGATGGGGCGCTTCCACCGGATTCTTGAGCCAGGGCTTAACTTCCTAATCCCTGTATTGGACAGAATCAGGTACGTACAGAGCCTGAAGGAGATAGTGATAGATGTTCCAGAACAGTCTGCTGTATCTCTTGATAACGTGACTCTCCAAATAGATGGAGTTTTATACCTCAGGATACTCGACCCCTTTAAAGCCAGTTATGGAGTGGAGGATCCAGAGTATGCTGTAACTCAGCTGGCTCAGACTACTATGAGATCAGAATTGGGAAAGCTCACTCTGGATAAAGTCTTCAGGGAGCGAGAGTCCCTCAATTCGAACATTGTACACTCCATCAACCAGGCGGCGGATGAGTGGGGGATTCGCTGCCTCCGATACGAGATCAAGGACATTCACGTTCCCCCACGGGTTAAAGAGTCCATGCAGATGCAGGTGGAAGCAGAGCGGAGAAAGAGAGCCACGGTTCTGGAATCTGAGGGAACGAGGGAGGCGGCCATAAACGTGGCAGAAGGACGCAAGCAGGCCCAGATTCTGGCTTCTGAGGCCGAGAAAGCAGAACGGATCAACAAAGCTGCAGGTGAAGCAAATGCTGTGTTGGCCAAAGCAGAAGCGAAAGCGAAGGCCATTCGTCTGCTGTCAGCTGCTCTGACCCTGCAGAATGGAGATGCAGCAGCGTCCCTCAGTGTAGCGGAGCAGTACGTCACCGCCTTCTCCAGCCTGGCCAAGGAGTCAAACACCATCATCCTGCCCTCAAACACAGGAGACATCTCCAGTATGGTCACACAGGCCATGGCTATTTACGGGAGTTTAGCCAAGACGCAGTCTGCAAAAGCCCTGGAGAACGTGAGCTCCACAACTCCAGACTTTCAAGCAGAGGAGAGTTTATTTCCTGAACCTCCGGCACCTCAGTCCACCTCCAGCTCCTAGATCACACCTTCCAACACAAAGTGACACACAACCTCAGATACAGGACAGGACTGACCCGTACCGCCCATGAGGAGATATTCTCATCTGCAGAATGTCCTCAGGAGGACATGAGAGCCATGAACACCACCCTGAAATGCTGGCTATAGATGAGAGATGACAGAGAAAGGATTAAAAAAGTTATAACAGTGACttttttcccctgtgtgtgtttctctttttttgtactattttctTTTGGAAAAAGTTAAGTTGCTGCAATTTTCCCTCCACTTCAAATCCAGATTGTTTGCTTATTTACAGATTTGCAAAATTTTTTCCCAATATTGTAAGACTCAATAACTATTTTGGGCCTCATTTTCTATAAATTAAAGCACTTATGTTTCTTTTATGTGTATATTATCATTGTCACAcattgagtgtgtgtttctttgcATTGAAAAATCAGATAATTCTAATTAAATTACTGCACTTATCTGattatacaaatataaacataatcatATAAACAGCATTAACCaatttagattatattttagagtaaagtctaaaagtctgattATGATATCAGATAAAGGAAGCTATATTTTAGCTCAGTCATCAGATTTCAGTTTATGTATACTCTTACGTTGAGTATTCTGGGATGGTTTAGTTACTTGATGTTTAGTTCATGTCTAATTCTGGGAGTTTATTGGCTAGTTGCAAAGtgaaaatctgattactgaccTATTCATAGAAACTTTTCCCAAAACAAAGTGTTTCCCATCATTTGATTACCTAAATTCATGCAAACACACGCATATAAACACACTCAATCTTGCGTCTCcatgtttgctgtttttttttttactttttaacaatGTGAATACcttgtgtaaaatatttgttaacctggaattttggagaaaacgATTATTTTGTGTGACAAcgataatatattaaatttatcTGGTTTGAATGGAAGCTGTTGTCGCCCAGTTGTTGGCCTTTTTTATTGCTGGTTTTTGTTTAGGGCCTCAAAAAGTAAGAATAAATATAGTAAGAATAATAAACCTCTTGTCAACAGTGTCATATATGTGTATCCTTTTTAGTATGTCTGCTTttggtttctttgttttttgttttgttaaaatggTACTGGGTAACATGCAGTAGCATTTT

Function

symbol description
stoml2 Predicted to be located in membrane. Orthologous to human STOML2 (stomatin like 2).

NR:

description
stomatin-like protein 2, mitochondrial isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231986.3 True 2459 mRNA 0.44 10 15780555 15790644
XR_002651445.1 False 2426 misc_RNA 0.44 11 15780555 15790644

Neighbor

gene id symbol gene type direction distance location
pigo pigo,LOC107713385,LOC107686475 coding downstream 2655 15757184 ~ 15777900 (-)
LOC111195054 NA coding downstream 55813 15719793 ~ 15724742 (-)
LOC111194982 NA coding downstream 102547 15676015 ~ 15678008 (-)
phf24 phf24,LOC107713387,LOC107677982 coding downstream 136841 15579023 ~ 15643714 (-)
LOC111195052 prkab1 coding downstream 255966 15510154 ~ 15524589 (-)
fam166b NA coding upstream 222726 16013370 ~ 16018295 (-)
rnf208 rnf208,si:dkey-106l3.6,LOC107688056,LOC107744121,LOC107713373,LOC107686464 coding upstream 247329 16037973 ~ 16065287 (-)
LOC103043237 slc5a1 coding upstream 279865 16070509 ~ 16089071 (-)
LOC103043740 slc5a1,LOC107713298,LOC107744177 coding upstream 306666 16097310 ~ 16124086 (-)
LOC103042914 ywhah,LOC108427260,LOC107562560,LOC107713377,LOC107555530,LOC107688000 coding upstream 341232 16131876 ~ 16136824 (-)
G176526 NA non-coding downstream 25313 15754534 ~ 15755242 (-)
G176529 NA non-coding downstream 27227 15752995 ~ 15753328 (-)
G176527 NA non-coding downstream 45119 15730276 ~ 15735436 (-)
G176486 NA non-coding downstream 96043 15684258 ~ 15684512 (-)
G176485 NA non-coding downstream 96496 15683513 ~ 15684059 (-)
G176635 NA non-coding upstream 158542 15949186 ~ 15987405 (-)
G176668 NA non-coding upstream 245025 16035669 ~ 16078723 (-)
G176732 NA non-coding upstream 544367 16335011 ~ 16409301 (-)
G176744 NA non-coding upstream 631219 16421863 ~ 16422108 (-)
G176758 NA non-coding upstream 693824 16484468 ~ 16484677 (-)
LOC111194989 NA other downstream 215092 15528296 ~ 15565463 (-)
LOC103044788 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107747044 other downstream 1109885 14657270 ~ 14670670 (-)
G176138 NA other downstream 1707871 14069749 ~ 14072684 (-)
G176136 LOC108415819 other downstream 1714411 14063500 ~ 14066144 (-)
G176146 LOC108415819 other downstream 1728594 14051562 ~ 14051961 (-)
G177526 NA other upstream 2381205 18171849 ~ 18174525 (-)
G177568 NA other upstream 2606938 18397582 ~ 18403008 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 2694998 18485642 ~ 18531635 (-)
LOC111195059 NA other upstream 2824248 18614892 ~ 18618612 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other upstream 3096384 18887028 ~ 18934600 (-)

Expression


Co-expression Network