LOC103035352


Basic Information

Item Value
gene id LOC103035352
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 30591858 ~ 30615583 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232530.3
GTGTGTAGGAAGGAGTGCAGTTGACGTATCGCTGATCTCTCTCAGACACACGGTGGAAAGCTTGCAGTCTGCTGTGATCAACATGTTGTCTGTGCATCTGTACTCACCcaatgttatattatttgttCTTCTATCTTCTGCTTCACTCACTGgtGCACAGGAGGTTGTTACAGCATCAAGAGGAGAGACTGTCGTCCTGCCGTGTTCTTCACCATTTGAATACAGTTATAAGGTTAATTTTAAGTGGAGTAAGGCTGGAGAGAGAGTTCCCTGTACTTattatattgaaaaaaacaaGACTGATAGCAGTAATTGCGAGTCTCGGTTTAAAGTAAATCCAGAACCTTTCGGACTGACTATAACTGATGTAAGAAGCAGTGATGCTGGTGTTTATAACTGTTCTATAACCAAAGTGCTACCACCACCAACAGAGGAGAAATTTTCATTCATGATTCTTAACGtttcagcagatcTTACTGTGGAGCAGATGAACAGCAGTGATCTCAGCTGTGTGGATCTGCTCTGTTCTCTGGAGGGTTTGAGTCCAGAGCAGGTAAACTTCACCTGGACCAGAGGATCTGAGCTCCTTCATCACCAGAACGTCCCGACCAGCATGAACAGCTCGCTGCATCTGTGTAAACCAAACTGGGCAAACGGAGACACGATCACCTGCCACGCCGACTACTCCAGCACCCACACACTCTACAGCCAGAACATCACACTCACATGCAGCACAAAAGagtgCAGTCCAAATCCTGAGATTCCCTGGCTGCTGATTGGCTCGGTTGTTGGTGCATGTGTAGGACTGCTGCTCCTCATCCTCCTTGGCATTGCCTTCTTTAAATGTAGGAAGAAAGAAAATCCCACAGGCTCCATAGTCTTCAGCAATAAAGTCTATGAGAACTTAAATTTCTTCACGCCCAGACCCAACACTGCACCCGGTTCTACAATGAATCGTAGACCCAACCCACAGGGTGAATGTCAGACTCAGAGAGAAGAGTGCATCTATGAGAATTAATGAGAACTGTTGGGACACTTGAGTaccactgtttgtgtgtgtgtacgtgtgtacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttgactagacactttatattattttctcaCGCAACGAATGCAAAGACACTATCAGAGTTCCTCTGTGCATGCTGTGCCTCTGCAAGATACAGGTTTGTTTTAAAGTAATTATATCATTAATCGTATATCTGTGTATTATTTTGTTACttgaaaataaatgacaaatgaCTTTGCA
>XM_022681401.1
GTGTGTAGGAAGGAGTGCAGTTGACGTATCGCTGATCTCTCTCAGACACACGGTGGAAAGCTTGCAGTCTGCTGTGATCAACATGTTGTCTGTGCATCTGTACTCACCcaatgttatattatttgttCTTCTATCTTCTGCTTCACTCACTGgtGCACAGGAGGTTGTTACAGCATCAAGAGGAGAGACTGTCGTCCTGCCGTGTTCTTCACCATTTGAATACAGTTATAAGGTTAATTTTAAGTGGAGTAAGGCTGGAGAGAGAGTTCCCTGTACTTattatattgaaaaaaacaaGACTGATAGCAGTAATTGCGAGTCTCGGTTTAAAGTAAATCCAGAACCTTTCGGACTGACTATAACTGATGTAAGAAGCAGTGATGCTGGTGTTTATAACTGTTCTATAACCAAAGTGCTACCACCACCAACAGAGGAGAAATTTTCATTCATGATTCTTAACGtttcagcagatcTTACTGTGGAGCAGATGAACAGCAGTGATCTCAGCTGTGTGGATCTGCTCTGTTCTCTGGAGGGTTTGAGTCCAGAGCAGGTAAACTTCACCTGGACCAGAGGATCTGAGCTCCTTCATCACCAGAACGTCCCGACCAGCATGAACAGCTCGCTGCATCTGTGTAAACCAAACTGGGCAAACGGAGACACGATCACCTGCCACGCCGACTACTCCAGCACCCACACACTCTACAGCCAGAACATCACACTCACATGCAGCACAAAAGagtgCAGTCCAAATCCTGAGATTCCCTGGCTGCTGATTGGCTCGGTTGTTGGTGCATGTGTAGGACTGCTGCTCCTCATCCTCCTTGGCATTGCCTTCTTTAAATGTAGGAAGAAAGAAAATCCCACAGGCTCCATAGTCTTCAGCAATAAAGTCTATGAGAACTTAAATTTCTTCACGCCCAGACCCAACACTGCACCCGGTTCTACAATGAATCGTAGACCCAACCCACAGGGTGAATGTCAGACTCAGAGAGAAGAGTGCATCTATGAGAATTAATGAGAACTGTTGGGACACTTGAGTaccactgtttgtgtgtgtgtacgtgtgtacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttgactagacactttatattattttctcaCGCAACGAATGCAAAGACACTATCAGAGTTCCTCTGTGCATGCTGTGCCTCTGCAAGATACAGGTTTGTTTTAAAGTAATTATATCATTAATCGTATATCTGTGTATTATTTTGTTACttgaaaataaatgacaaatgaCTTTGCA
>XM_022681402.1
GTGTGTAGGAAGGAGTGCAGTTGACGTATCGCTGATCTCTCTCAGACACACGGTGGAAAGCTTGCAGTCTGCTGTGATCAACATGTTGTCTGTGCATCTGTACTCACCcaatgttatattatttgttCTTCTATCTTCTGCTTCACTCACTGgtGCACAGGAGGTTGTTACAGCATCAAGAGGAGAGACTGTCGTCCTGCCGTGTTCTTCACCATTTGAATACAGTTATAAGGTTAATTTTAAGTGGAGTAAGGCTGGAGAGAGAGTTCCCTGTACTTattatattgaaaaaaacaaGACTGATAGCAGTAATTGCGAGTCTCGGTTTAAAGTAAATCCAGAACCTTTCGGACTGACTATAACTGATGTAAGAAGCAGTGATGCTGGTGTTTATAACTGTTCTATAACCAAAGTGCTACCACCACCAACAGAGGAGAAATTTTCATTCATGATTCTTAACGtttcagcagatcTTACTGTGGAGCAGATGAACAGCAGTGATCTCAGCTGTGTGGATCTGCTCTGTTCTCTGGAGGGTTTGAGTCCAGAGCAGGTAAACTTCACCTGGACCAGAGGATCTGAGCTCCTTCATCACCAGAACGTCCCGACCAGCATGAACAGCTCGCTGCATCTGTGTAAACCAAACTGGGCAAACGGAGACACGATCACCTGCCACGCCGACTACTCCAGCACCCACACACTCTACAGCCAGAACATCACACTCACATGCAGCACAAAAGagtgCAGTCCAAATCCTGAGATTCCCTGGCTGCTGATTGGCTCGGTTGTTGGTGCATGTGTAGGACTGCTGCTCCTCATCCTCCTTGGCATTGCCTTCTTTAAATGAAGAAAGAAAATCCCACAGGCTCCATAGTCTTCAGCAATAAAGTCTATGAGAACTTAAATTTCTTCACGCCCAGACCC

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232530.3 True 1297 mRNA 0.44 5 30591858 30615583
XM_022681401.1 False 1297 mRNA 0.44 6 30591858 30615583
XM_022681402.1 False 924 mRNA 0.46 6 30591858 30615214

Neighbor

gene id symbol gene type direction distance location
bbx bbx coding upstream 30927 30504045 ~ 30560931 (+)
alcam NA coding upstream 323140 30133194 ~ 30268718 (+)
LOC103038990 NA coding upstream 873979 29701362 ~ 29717879 (+)
LOC103038373 NA coding upstream 900363 29683230 ~ 29691495 (+)
LOC103038052 zpld1,zpld1a,LOC103038052,LOC108276676,LOC107548885,LOC107693966 coding upstream 922621 29646692 ~ 29669237 (+)
LOC107196917 NA coding downstream 2017 30617600 ~ 30628614 (+)
LOC103034395 NA coding downstream 27320 30642903 ~ 30647778 (+)
tiprl tiprl,LOC106603731 coding downstream 33864 30649447 ~ 30654188 (+)
riox2 mina coding downstream 41610 30657193 ~ 30674778 (+)
sim2 sim2,LOC106603444,LOC107572951,LOC107676491 coding downstream 145880 30761463 ~ 30790737 (+)
G180096 NA non-coding upstream 10001 30576057 ~ 30581857 (+)
G180079 NA non-coding upstream 43887 30541824 ~ 30547971 (+)
G180073 NA non-coding upstream 119256 30472256 ~ 30472602 (+)
G180032 NA non-coding upstream 318139 30272481 ~ 30273719 (+)
G180031 NA non-coding upstream 319418 30271414 ~ 30272440 (+)
LOC111194988 NA non-coding downstream 18567 30634150 ~ 30635101 (+)
G180102 crybg3 non-coding downstream 62285 30677868 ~ 30681397 (+)
G180151 NA non-coding downstream 147986 30763569 ~ 30858472 (+)
G180152 NA non-coding downstream 183411 30798994 ~ 30802874 (+)
G180166 NA non-coding downstream 299033 30914616 ~ 30915150 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 3066417 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 3675514 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 3712775 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 5334389 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 6137236 24447792 ~ 24454622 (+)
G180235 erg other downstream 523761 31139344 ~ 31151095 (+)
G180266 NA other downstream 817615 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 1649415 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 2434659 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 3557341 34172924 ~ 34328970 (+)

Expression


Co-expression Network