ubl3 (ubl3,LOC107741158)


Basic Information

Item Value
gene id ubl3
gene name ubl3,LOC107741158
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12836730 ~ 12870232 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235411.3
ttttttgctcgagCTTAGAAAGGCTGCTCCGCTTTCGCCGCTCCGCTTTTTCTCCCCCaccgaccgaccgaccgaccgCCGCCATGTTTTAGAGAAGCAGAATGACaggagagagagcagagggTGAGAAAAGAAGAATTAGACTGTGAAAAatctccacacttcacagctCAGGCCCAGTGGACGGCTGTTTTCTGCCAGTACCGAGATTATCCCCGCCGGAGGAGACGTTCACCAGGATTAATTTGTCAAAAGGTCGAGTCTCGGGTGTTATAATGCTCTGATATTCTAGGGTTTTTGTTGCGAAGGGCATATATTTCTCCCCTCGCTGGTTTTCTGTCAGGATGGGAGGGAATCCTCCCACCTAAAACCTTCTGCTTTATTTCCGCTCCGCTCCGCGCtgtcatatacagtacaggaaTCAGAAGTGTGTTTAAAACCGAGCGCGGTCCTGCTGTACTGTTCTAACGAGCTGCTGCCGCGCTTTGTTTACAACACCGGAGCTGCAGACCACGGGAATAACGAGACGCTGTTTCTGTGGTACAGTGTCCGCTGTAGCGCTGCTCTCGGGGACTGTCAACAACTCCTAACAAAGGAGGAGGAAACTAGAGactttaaagaagaagaagaagagagtaaGGATGACGGGCTCTGCCCCAACTGAAGTGATCAACTTGAGGCTCATCTTGGTAAGCGGGAAAACAAAGGAGTTCCCGTTCTCTCCCAATGACTCAGCTACGGACATCGCAAAACATGTGTATGACAACTGGCCAATGGACTGGGAGGAGGAGCAGGTGAGCAGTCCAAACATCCTGCGGCTTATCTACCAGGGACGCTTTCTGCACGGCAACGTCACGCTAGGAGctttaAAACTGCCTTTTGGAAAAACCACAGTGATGCATTTAGTTGCTAGAGAGACATTGCCTGAGCCAAATTCCCAAGgCCAGAGGAATCGGGAGAAAAGTGGAGAGAGCAACTGCTGTGTGATTCTATAAAGATATCCCTGTATCCAAGATCACACATATTGTGTAGAATCCTATGCTGtgaaaatacacacatacactctcttttactcacacacagacacacacacacacacacacacaca

Function

symbol description
ubl3 Located in extracellular exosome.

NR:

description
ubiquitin-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235411.3 True 1108 mRNA 0.49 5 12836730 12870232

Neighbor

gene id symbol gene type direction distance location
katnal1 katnal1,LOC107741157,LOC107653760,LOC107578067,LOC107697436,LOC107743395 coding upstream 27561 12796116 ~ 12809169 (+)
LOC103039534 hmgb1a,LOC100304841,LOC108439208,LOC107653759,LOC107583338,LOC107578084 coding upstream 42537 12791223 ~ 12794193 (+)
ptrh2 ptrh2,LOC107744620,LOC107548881,LOC107699263,LOC107693958,LOC107747021,LOC107576753 coding upstream 144597 12673878 ~ 12692133 (+)
LOC111195108 NA coding upstream 519996 12314732 ~ 12316734 (+)
cnih2 cnih2,LOC100706298 coding upstream 685680 12144051 ~ 12151050 (+)
LOC103046100 NA coding downstream 157889 13028121 ~ 13029690 (+)
LOC103041695 LOC108412888 coding downstream 168718 13038950 ~ 13040433 (+)
LOC103047014 NA coding downstream 228394 13098626 ~ 13099926 (+)
LOC103041997 NA coding downstream 254267 13124499 ~ 13126067 (+)
LOC103047318 NA coding downstream 273891 13144123 ~ 13146834 (+)
G175384 btg3 non-coding upstream 76501 12758233 ~ 12760229 (+)
G175378 cltc,LOC107693955 non-coding upstream 97858 12732082 ~ 12738872 (+)
G175372 cltca non-coding upstream 125346 12710314 ~ 12711384 (+)
G175356 cltc non-coding upstream 127952 12703614 ~ 12708778 (+)
G175368 NA non-coding upstream 176447 12659470 ~ 12660283 (+)
G175388 NA non-coding downstream 550 12870782 ~ 12872646 (+)
G175641 NA non-coding downstream 25890 12896122 ~ 12896464 (+)
G175644 NA non-coding downstream 28647 12898879 ~ 12899168 (+)
G175645 NA non-coding downstream 29379 12899611 ~ 12900020 (+)
G175665 NA non-coding downstream 183467 13053699 ~ 13183048 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other upstream 91677 12739503 ~ 12745053 (+)
rnft1 rnft1 other upstream 296529 12524141 ~ 12540201 (+)
LOC103027177 tmem261,LOC103027177 other upstream 627281 12191356 ~ 12209449 (+)
G175108 NA other upstream 923274 11908872 ~ 11913456 (+)
G174994 NA other upstream 1400200 11429871 ~ 11436530 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 423066 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 483536 13353768 ~ 13418416 (+)
G175900 NA other downstream 809127 13679359 ~ 13685563 (+)
LOC103038733 bcl7b other downstream 928407 13798639 ~ 13889044 (+)
prdm15 LOC108413920,LOC106511912 other downstream 977030 13847262 ~ 13868855 (+)

Expression


Co-expression Network