LOC103042312 (LOC108412889,LOC108410529,LOC108410536,LOC100305029,LOC108412892,LOC108412890,LOC108410535)


Basic Information

Item Value
gene id LOC103042312
gene name LOC108412889,LOC108410529,LOC108410536,LOC100305029,LOC108412892,LOC108412890,LOC108410535
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 13242249 ~ 13243689 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235415.3
ACAGTATCAAAGCAATAATGGCTCTGCAGCGTTACtcttttattagtattatgaggGCATTATAGAACATTTAATGTAACAAGAATTTAAAATAGATGTTCCAGCATAAATCAAATTATTGCCAATTGTTTTTACTAGATATTTTTAATAGGTATTTCCAGATGGCTGCTAACATGACCTCCATGCAGTCAGTTTCTTCAACCAACACAACATTTATTCGTCCCTCCAGCTTTTACATTAACGGACTTTACAACATCCCACATGCAAAGTACTACTATGTGTTTCTGTGCTTTGTGTATGCAGTGACTTTGTTGGGGAACTCTTTTATAATGGGCACCATATACCTGGCACGAAGCTTGCATACAGCTAAGTATATAGCCGTCTTCAATTTGGCCTTTTCTGATCTGTGTGGAAGTTCTGCTCTTATTCCGAAGCTTCTGGACATGTTTCTGTTTGAGAACCAGTCCATTTCTTATGAAGCCTGTCtaacaaacatgttttttgtttatttttttatgactcTGCAGTCTCTCACCTTGCTTGCTATGGCCTACGATAGGTTAATTGCCATATGCTTTCCTTTAAGATATCATGCAATTGTCACCAAAACAACAATGACTTTGATCATTGGTGTAATGTGGATATTGTCTATGAGTGTCAATGCTCTGCTGGTAGCTCTGGTTACCAGGTTGTCCTTCTGTAGATCCACTACAGTTAACAGCTATTTCTGTGATCATGGGCCTATCTATAAGCTAGCCTGTAATGATAACTCTATTAATTCCATAATGGGTTATGTCTGTACTGCTGCACTTCTTTATATTCCATTGATACTAATTGCTCTTTCATATGTTTGTATCGGTTTTGCACTTAAGAAAATCTCACATGGTGTTGAGCGAATCAAAGCTATGAAAACCTGCACCTCCCATCTCATATTAGTAGCCATGTTTTATTTACCAATAATTGGTGTTTACACTGCAGCTCTAACAACATCTTTAAATACTAATATCAGAATAATCAATACTGCCCTAACACAAACTATTCCACCCATGTTAAACCCCATCATATACACACTAAAGACGGAGGAGGTTTCACAGTCTATTAAAGCTCTCTACAAACGAAGCAAAGTGAACTCTGTAATGCAAACAGCTGTCAAAAACAGAAAGGGCAAAATACCTGTGACCTCATGAGAGACATGAGCATGGGATGTCCCACAATAGTCCATATATTCATCAATTTATACATTGGTGCTTGTTAGTTTTATTGTACTGTAACATTTTtgtgtgtaatagtgatttCATAAATGTGTAATCAGCAGCTATTTTCATAGACTATAAATCAACACAAGGTAGctactgtttaaataaataaataaaaactcatcACATATCCTTCTGCCAGCAACAGTTTGGTTGTGTGATTGTAGTTGTGGAAAGTCAGAAAC

Function

NR:

description
PREDICTED: olfactory receptor 1496-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235415.3 True 1441 mRNA 0.36 1 13242249 13243689

Neighbor

gene id symbol gene type direction distance location
LOC103021350 LOC108412888 coding upstream 19561 13220973 ~ 13222688 (+)
LOC103047635 NA coding upstream 25930 13215309 ~ 13216319 (+)
LOC111195044 NA coding upstream 52332 13185677 ~ 13189917 (+)
LOC103047318 NA coding upstream 95415 13144123 ~ 13146834 (+)
LOC103041997 NA coding upstream 116182 13124499 ~ 13126067 (+)
LOC111195046 LOC108412889,LOC108410529,LOC108410536,LOC100305029,LOC108412892,LOC108412890,LOC108410535 coding downstream 6661 13250350 ~ 13251550 (+)
LOC103021665 NA coding downstream 17399 13261088 ~ 13262232 (+)
LOC103033364 NA coding downstream 330779 13574468 ~ 13585349 (+)
LOC103037129 NA coding downstream 342968 13586657 ~ 13594268 (+)
ska2 NA coding downstream 523182 13766871 ~ 13775830 (+)
G175665 NA non-coding upstream 59201 13053699 ~ 13183048 (+)
G175671 NA non-coding upstream 172548 13064228 ~ 13069701 (+)
G175645 NA non-coding upstream 342229 12899611 ~ 12900020 (+)
G175644 NA non-coding upstream 343081 12898879 ~ 12899168 (+)
G175641 NA non-coding upstream 345785 12896122 ~ 12896464 (+)
G175763 NA non-coding downstream 41248 13284937 ~ 13285718 (+)
G175771 NA non-coding downstream 69365 13313054 ~ 13315228 (+)
G175779 NA non-coding downstream 89032 13332721 ~ 13336148 (+)
G175824 NA non-coding downstream 139600 13383289 ~ 13384619 (+)
G175810 NA non-coding downstream 142543 13386232 ~ 13388819 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other upstream 497196 12739503 ~ 12745053 (+)
rnft1 rnft1 other upstream 702048 12524141 ~ 12540201 (+)
LOC103027177 tmem261,LOC103027177 other upstream 1032800 12191356 ~ 12209449 (+)
G175108 NA other upstream 1328793 11908872 ~ 11913456 (+)
G174994 NA other upstream 1805719 11429871 ~ 11436530 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 49609 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 110079 13353768 ~ 13418416 (+)
G175900 NA other downstream 435670 13679359 ~ 13685563 (+)
LOC103038733 bcl7b other downstream 554950 13798639 ~ 13889044 (+)
prdm15 LOC108413920,LOC106511912 other downstream 603573 13847262 ~ 13868855 (+)

Expression


Co-expression Network