LOC103046100


Basic Information

Item Value
gene id LOC103046100
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 13028121 ~ 13029690 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235430.3
AGGTACAGGTAAGACAATCAGTCAGTTTGTCTCTGCACATAACTGTGAACAATTCTGTGAATTTAACACTTTCTATACTGCCTACAATGAACCATATATTACAGGCTCTATAGACAAGACCGTAGAAAGAGCAAACGTCAAGCAAGTGGATGGAAAGGTAATACATCTCGTAAATACATCTACGTTTTATACATGGACAACATTTTATTTGGTTTCTGTAACATAAGTCTACTATAACTGTGGTTATGCCTTAGCAAATGCATTTTGTGTGAGAAtaactcatttttaattttgtttttagcaTGTCAGCTAATAACCAGACAACCAATACAGTTGTGAAAGAGTTTTTCATTCTGGGTTTCCTTGGACTACAGCCGGAATACTACAACCTGATTGCTGCAGTTTTCTTGGGCATCTATGTAACTGTGGTAGTGGGTAACTCAGTGTTTGTGTTGATGATTGTCATTGAACCAAGCCTGCAAAAGCCCATGTACATCATCATGATGAATTTAGCTCTGGCAGATATTGGGTTTTGCACTGTAGTGCTGCCTAAAATTGCTGTCCGTTACTTGTTTGATGATGGATCCATTTCTTTCCATGTTTGTATGTTTCAGAGGATGCTTATCCACTATTTTTCAAACGTTGATTTACTTGTAATGACAACCATGGCTTTAGATCGATATCTGGCAATCTGCTTTCCCCTCAGATATCCTGTTTTAATGACCAATCGAACTATGATCCTCTTAACAGGGTTTTCATGGACAATTTCCATGATTATTCCTGCCATTATCACAATACTGGCCTCACAGATGCCTTTCTGTGGACCAAATCTCATTATCCATTGCTATTGTGACACATTGTCTTTATATAATCTAGTTTGCTCTGATGTTAGCTTCCAGAGCtatgttttcacctgtttagtTATGTGTGTGATTGCACTAACTCTCACTGTCATAATCTACTTTTACATCAATATTGTGGTGTCTATAATCAGAACAGCAAATAATCATAGCAGAGTGAAAGCCTTCTCTACCTGTGCCACACAGCTATGCATTATCTGCATCCATTATGTGCCCCGTTTTGTTGTTTTCACAGCACCTTATCTACCCAATGTGATATTTGATATCAATCAGAGACTTGCATTTACTTTGTTTTATTGGTTATTCCCACCACTAGTAAACCCATTCTTATACTTTTTTAGGGCCAAAGAGATACGAAAACTGTTCTTCAAATGGTGCATCAGTGCACAGAAAAATAGAAGGGGCcacaaaatcaatattttgtcagtGTTCAAATGAGGTTCTCCTTACACTTTACATATTGGTTTGATTTATCAATGTATCaatgtttatttacaggaagctGAAGTCTCATTTAAGTTTGTGCCCTGTATAAATGACATAAAAGTACATTCATATTGTGAATGAAGTTTGATGATGTAAGTTTATATTCAACAACTGGCGCTGCACGTTGCATACAGTGTCAGAAATTACATACACAATTCATTTTATAATGATTAATGACTGACCATTGTTTGAAGCTAATGTGTCACATTTTAACATACTACATT

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235430.3 True 1570 mRNA 0.36 1 13028121 13029690

Neighbor

gene id symbol gene type direction distance location
ubl3 ubl3,LOC107741158 coding upstream 157889 12836730 ~ 12870232 (+)
katnal1 katnal1,LOC107741157,LOC107653760,LOC107578067,LOC107697436,LOC107743395 coding upstream 218952 12796116 ~ 12809169 (+)
LOC103039534 hmgb1a,LOC100304841,LOC108439208,LOC107653759,LOC107583338,LOC107578084 coding upstream 233928 12791223 ~ 12794193 (+)
ptrh2 ptrh2,LOC107744620,LOC107548881,LOC107699263,LOC107693958,LOC107747021,LOC107576753 coding upstream 335988 12673878 ~ 12692133 (+)
LOC111195108 NA coding upstream 711387 12314732 ~ 12316734 (+)
LOC103041695 LOC108412888 coding downstream 9260 13038950 ~ 13040433 (+)
LOC103047014 NA coding downstream 68936 13098626 ~ 13099926 (+)
LOC103041997 NA coding downstream 94809 13124499 ~ 13126067 (+)
LOC103047318 NA coding downstream 114433 13144123 ~ 13146834 (+)
LOC111195044 NA coding downstream 155987 13185677 ~ 13189917 (+)
G175645 NA non-coding upstream 128101 12899611 ~ 12900020 (+)
G175644 NA non-coding upstream 128953 12898879 ~ 12899168 (+)
G175641 NA non-coding upstream 131657 12896122 ~ 12896464 (+)
G175388 NA non-coding upstream 155475 12870782 ~ 12872646 (+)
G175384 btg3 non-coding upstream 267892 12758233 ~ 12760229 (+)
G175665 NA non-coding downstream 24009 13053699 ~ 13183048 (+)
G175671 NA non-coding downstream 34538 13064228 ~ 13069701 (+)
G175763 NA non-coding downstream 255247 13284937 ~ 13285718 (+)
G175771 NA non-coding downstream 283364 13313054 ~ 13315228 (+)
G175779 NA non-coding downstream 303031 13332721 ~ 13336148 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other upstream 283068 12739503 ~ 12745053 (+)
rnft1 rnft1 other upstream 487920 12524141 ~ 12540201 (+)
LOC103027177 tmem261,LOC103027177 other upstream 818672 12191356 ~ 12209449 (+)
G175108 NA other upstream 1114665 11908872 ~ 11913456 (+)
G174994 NA other upstream 1591591 11429871 ~ 11436530 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 263608 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 324078 13353768 ~ 13418416 (+)
G175900 NA other downstream 649669 13679359 ~ 13685563 (+)
LOC103038733 bcl7b other downstream 768949 13798639 ~ 13889044 (+)
prdm15 LOC108413920,LOC106511912 other downstream 817572 13847262 ~ 13868855 (+)

Expression


Co-expression Network