LOC103025645 (LOC108424540)


Basic Information

Item Value
gene id LOC103025645
gene name LOC108424540
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 26880649 ~ 26896187 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236204.3
GTTCTCCCATCTGGCTGGAGTCGTCATGTCCCAACATTGTGAAATTGGACACCTACTTTCTTAACCCTTCCCAGCTAGTCCGCCCTCTCTACTCTCTCCTCTGAAACTCAGGCAGCCGCTGTGCAGCGAGAGTTTAGAGACTCTTAATGAATGTTCTCGGATTAATATTCAACACCACGCGGAGATCTTCCACTGACGGAGAGTCCGACCACCAGCCCGAAGTTTCTGCTAAACAAACAGGGCTGAGGAGCGGTATCCGGGCGGGGGCATGTGGAAGACGGAGGGGGGGTTTCCTCTCAGGAGAGGAACGCTTTAACCTGCCTAATCAGATCTGATTAATTAATCAGTGTGAGTTCAAAAGCTCCGGGGTGCCCTGGCATTTGGACCGGAGATGTCAGGACCAGTTTCTCGGTGAGGAGAAGAGCAGATGGAAGAGGAGGCGGACAGCAACGGGCAAGAAGAACATAGAACTGATGACCCTGCTCTTTCTGGCCCCAAAGAGAAGACAGAGACCCAGCTTCAGCACGGCCAGGAACCCAGCACACCAGACCAAGATCTGCCCATCATGCACTGGGAGGACCTGAGTTTGCGGATAGCAGAGCttgaaaaacaggaggaagagaggaggaaaagagCAGAGTCCAAGAGTTCAGCGGAACAAGAGTCAGAGCTGGGACAGTGGTCTCACGTAAAGCAGCAGTCGCCTCTCAGGAAGCAGTGGGAAGATGACGATGGCTTCGGAGGATGCCGATTTCCATTCATTACATCTCGGTTTACCAGCCCTAAAAATCTGCAGCTTTGTTTTGTCAACAACAGTGACAGCGAGGAAGAAGATGATGAAGGGACATCCAGCAAAAAGGGCCCGCGCGACACAGCGGGACGTGGGCGTTGTTGTGCGGGCCTGAAGCAGGAAGTGAGAGCGGCTCTGAGTGAACTCAGAGATAAGCTTTGGGCTGAactgaagcagcagcagCAGCAGCCGTCCCGCAGTGACCTGAACATTCGGAGAAAAATGCTTAGCCGCAGTGACCTGCAGACCTGTTCCGTACTCCAGCTAAACGCCCTCAGTGCTTCCCTCAGCGAAGACATTCAGGATCTGAGCTCAGAACTAGTGAAGCATCTGGTGGTGCGGGACAATCTTCGGATAAAGCAGGACGCCATGCTCCTGGATGTACAGGATATGACATCATCATGACTCATGTCTGGCCATGAGTAGTCATCTGCTAAAATTGACTAAATGGACTAGAGAGGAAAATGGGCCTGTTTGACaactgcagtgtgttgttagaTAAGATCATTTCTTCACCTTCTCCTCTAAAACCACAGTGTCCTGTTTGTCTCGAGTTGCTCACACAAATGTTGCTTATTATTAAGTGGgtcagattattttttattttcagtcacAAGTTTTAttgtgagaattttttttttttctgaatgtgaACAAGTAGCTCTTTAAGTATTAAGCGGGCGTGCTCAGCATTATTAAATATGCCTGGTCATTTATGGTCAGTTTTTATTATCTGTAAAGTCTTTAAAAGCTGCTATAAAATCCATGTGTGATTGGTAACTGTGATACATATTAATCAGTGATTTATTTTCAGTTGATTATGCTTCATGTGAATATGAAATGCATGGAATATACTACAGCATCTGCCAGCTGCAAATGGGAATTTAGTTACTGACACTTTttgacagtattttttattttttattaaaatgaacaaagtttatattaactgaataaaattataacattatTGAA
>XM_007236205.3
GAGTTCTCCCATCTGGCTGGAGTCGTCATGTCCCAACATTGTGAAATTGGACACCTACTTTCTTAACCCTTCCCAGCTAGTCCGCCCTCTCTACTCTCTCCTCTGAAACTCAGGCAGCCGCTGTGCAGCGAGAGTTTAGAGACTCTTAATGAATGTTCTCGGATTAATATTCAACACCACGCGGAGATCTTCCACTGACGGAGAGTCCGACCACCAGCCCGAAGTTTCTGCTAAACAAACAGGGCTGAGGAGCGGTATCCGGGCGGGGGCATGTGGAAGACGGAGGGGGGGTTTCCTCTCAGGAGAGGAACGCTTTAACCTGCCTAATCAGATCTGATTAATTAATCAGTGTGAGTTCAAAAGCTCCGGGGTGCCCTGGCATTTGGACCGGAGATGTCAGGACCAGTTTCTCGGTGAGGAGAAGAGATGGAAGAGGAGGCGGACAGCAACGGGCAAGAAGAACATAGAACTGATGACCCTGCTCTTTCTGGCCCCAAAGAGAAGACAGAGACCCAGCTTCAGCACGGCCAGGAACCCAGCACACCAGACCAAGATCTGCCCATCATGCACTGGGAGGACCTGAGTTTGCGGATAGCAGAGCttgaaaaacaggaggaagagaggaggaaaagagCAGAGTCCAAGAGTTCAGCGGAACAAGAGTCAGAGCTGGGACAGTGGTCTCACGTAAAGCAGCAGTCGCCTCTCAGGAAGCAGTGGGAAGATGACGATGGCTTCGGAGGATGCCGATTTCCATTCATTACATCTCGGTTTACCAGCCCTAAAAATCTGCAGCTTTGTTTTGTCAACAACAGTGACAGCGAGGAAGAAGATGATGAAGGGACATCCAGCAAAAAGGGCCCGCGCGACACAGCGGGACGTGGGCGTTGTTGTGCGGGCCTGAAGCAGGAAGTGAGAGCGGCTCTGAGTGAACTCAGAGATAAGCTTTGGGCTGAactgaagcagcagcagCAGCAGCCGTCCCGCAGTGACCTGAACATTCGGAGAAAAATGCTTAGCCGCAGTGACCTGCAGACCTGTTCCGTACTCCAGCTAAACGCCCTCAGTGCTTCCCTCAGCGAAGACATTCAGGATCTGAGCTCAGAACTAGTGAAGCATCTGGTGGTGCGGGACAATCTTCGGATAAAGCAGGACGCCATGCTCCTGGATGTACAGGATATGACATCATCATGACTCATGTCTGGCCATGAGTAGTCATCTGCTAAAATTGACTAAATGGACTAGAGAGGAAAATGGGCCTGTTTGACaactgcagtgtgttgttagaTAAGATCATTTCTTCACCTTCTCCTCTAAAACCACAGTGTCCTGTTTGTCTCGAGTTGCTCACACAAATGTTGCTTATTATTAAGTGGgtcagattattttttattttcagtcacAAGTTTTAttgtgagaattttttttttttctgaatgtgaACAAGTAGCTCTTTAAGTATTAAGCGGGCGTGCTCAGCATTATTAAATATGCCTGGTCATTTATGGTCAGTTTTTATTATCTGTAAAGTCTTTAAAAGCTGCTATAAAATCCATGTGTGATTGGTAACTGTGATACATATTAATCAGTGATTTATTTTCAGTTGATTATGCTTCATGTGAATATGAAATGCATGGAATATACTACAGCATCTGCCAGCTGCAAATGGGAATTTAGTTACTGACACTTTttgacagtattttttattttttattaaaatgaacaaagtttatattaactgaataaaattataacattatTGAA
>XM_007236206.3
CGGAGTGAGTTCTCCCATCTGGCTGGAGTCGTCATGTCCCAACATTGTGAAATTGGACACCTACTTTCTTAACCCTTCCCAGCTAGTCCGCCCTCTCTACTCTCTCCTCTGAAACTCAGGCAGCCGCTGTGCAGCGAGAGTTTAGAGACTCTTAATGAATGTTCTCGGATTAATATTCAACACCACGCGGAGATCTTCCACTGACGGAGAGTCCGACCACCAGCCCGAAGTTTCTGCTAAACAAACAGGGCTGAGGAGCGGTATCCGGGCGGGGGCATGTGGAAGACGGAGGGGGGGTTTCCTCTCAGGAGAGGAACGCTTTAACCTGCCTAATCAGATCTGATTAATTAATCAGTGTGAGTTCAAAAGCTCCGGGGTGCCCTGGCATTTGGACCGGAGATGTCAGGACCAGTTTCTCGGTGAGGAGAAGAGCAGATGGAAGAGGAGGCGGACAGCAACGGGCAAGAAGAACATAGAACTGATGACCCTGCTCTTTCTGGCCCCAAAGAGAAGACAGAGACCCAGCTTCAGCACGGCCAGGAACCCAGCACACCAGACCAAGATCTGCCCATCATGCACTGGGAGGACCTGAGTTTGCGGATAGCAGAGCttgaaaaacaggaggaagagaggaggaaaagagCAGAGTCCAAGAGTTCAGCGGAACAAGAGTCAGAGCTGGGACAGTGGTCTCACGTAAAGCAGCAGTCGCCTCTCAGGAAGCAGTGGGAAGATGACGATGGCTTCGGAGGATGCCGATTTCCATTCATTACATCTCGGTTTACCAGCCCTAAAAATCTGCAGCTTTGTTTTGTCAACAACAGTGACAGCGAGGAAGAAGATGATGAAGGGACATCCAGCAAAAAGGGCCCGCGCGACACAGCGGGACGTGGGCGTTGTTGTGCGGGCCTGAAGCAGGAAGTGAGAGCGGCTCTGAGTGAACTCAGAGATAAGCTTTGGGCTGAactgaagcagcagcagCAGCCGTCCCGCAGTGACCTGAACATTCGGAGAAAAATGCTTAGCCGCAGTGACCTGCAGACCTGTTCCGTACTCCAGCTAAACGCCCTCAGTGCTTCCCTCAGCGAAGACATTCAGGATCTGAGCTCAGAACTAGTGAAGCATCTGGTGGTGCGGGACAATCTTCGGATAAAGCAGGACGCCATGCTCCTGGATGTACAGGATATGACATCATCATGACTCATGTCTGGCCATGAGTAGTCATCTGCTAAAATTGACTAAATGGACTAGAGAGGAAAATGGGCCTGTTTGACaactgcagtgtgttgttagaTAAGATCATTTCTTCACCTTCTCCTCTAAAACCACAGTGTCCTGTTTGTCTCGAGTTGCTCACACAAATGTTGCTTATTATTAAGTGGgtcagattattttttattttcagtcacAAGTTTTAttgtgagaattttttttttttctgaatgtgaACAAGTAGCTCTTTAAGTATTAAGCGGGCGTGCTCAGCATTATTAAATATGCCTGGTCATTTATGGTCAGTTTTTATTATCTGTAAAGTCTTTAAAAGCTGCTATAAAATCCATGTGTGATTGGTAACTGTGATACATATTAATCAGTGATTTATTTTCAGTTGATTATGCTTCATGTGAATATGAAATGCATGGAATATACTACAGCATCTGCCAGCTGCAAATGGGAATTTAGTTACTGACACTTTttgacagtattttttattttttattaaaatgaacaaagtttatattaactgaataaaattataacattatTGAATAGAA

Function

NR:

description
PREDICTED: schwannomin-interacting protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236204.3 False 1765 mRNA 0.46 7 26880657 26896182
XM_007236205.3 False 1764 mRNA 0.46 7 26880655 26896182
XM_007236206.3 True 1775 mRNA 0.46 7 26880649 26896187

Neighbor

gene id symbol gene type direction distance location
nle1 nle1,LOC107720672,LOC107708614 coding upstream 87149 26783048 ~ 26793500 (+)
LOC103021428 LOC108410728,LOC108277327 coding upstream 189647 26081795 ~ 26691002 (+)
LOC103045760 LOC108410697 coding upstream 1237333 25625356 ~ 25643316 (+)
LOC103045464 pitpnab,pitpna,LOC103045464,LOC108276543,LOC105890453,LOC108237022,LOC108410689,LOC107386993 coding upstream 1263425 25589823 ~ 25617224 (+)
LOC103044955 slc43a2b,LOC103044955,LOC108410672,LOC108277386,LOC107701113,LOC107720664,LOC107684998 coding upstream 1294086 25557064 ~ 25586563 (+)
LOC103026363 LOC108424538 coding downstream 1283 26897470 ~ 26902329 (+)
LOC103026857 LOC108424542,LOC101883815,LOC107702789,LOC107586167,LOC107675994,LOC107554304,LOC108277076 coding downstream 6652 26902839 ~ 26909223 (+)
LOC103031870 NA coding downstream 24897 26921084 ~ 26926573 (+)
sytl2 sytl2 coding downstream 45164 26941351 ~ 26972401 (+)
crebzf crebzf coding downstream 87063 26983250 ~ 26988348 (+)
G179335 NA non-coding upstream 27666 26852695 ~ 26852983 (+)
G179320 slc25a1a,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324,LOC108276564,LOC105890537 non-coding upstream 81447 26794403 ~ 26799202 (+)
G179239 NA non-coding upstream 479382 26401008 ~ 26401267 (+)
G179183 NA non-coding upstream 911857 25964643 ~ 25968792 (+)
G179177 NA non-coding upstream 1001794 25878643 ~ 25878855 (+)
G179390 NA non-coding downstream 158762 27054949 ~ 27055164 (+)
G179399 NA non-coding downstream 210116 27106303 ~ 27106693 (+)
G179404 NA non-coding downstream 254927 27151114 ~ 27240082 (+)
G179416 NA non-coding downstream 325715 27221902 ~ 27232612 (+)
G179371 NA non-coding downstream 548590 27444777 ~ 27447272 (+)
LOC103024073 LOC108424537 other upstream 1566 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 1623180 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 2426027 24447792 ~ 24454622 (+)
G178485 NA other upstream 3915660 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 4171092 22689001 ~ 22709557 (+)
rnasek rnasek,LOC107554319 other downstream 17563 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 628115 27524302 ~ 27525441 (+)
G180235 erg other downstream 4243157 31139344 ~ 31151095 (+)
G180266 NA other downstream 4537011 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 5368811 32264998 ~ 32273798 (+)

Expression


Co-expression Network