Gene
RNA
| Item | Value |
|---|---|
| gene id | G68696 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 676995 ~ 678472 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU78271 | True | 1478 | lncRNA | 0.33 | 1 | 676995 | 678472 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_00644021_00646785 | NA | coding | upstream | 29920 | 644021 ~ 647075 (+) |
| CI01000012_00593086_00594741 | NA | coding | upstream | 81530 | 592126 ~ 595465 (+) |
| CI01000012_00502185_00516358 | NA | coding | upstream | 160087 | 500151 ~ 516908 (+) |
| CI01000012_00318129_00318595 | NA | coding | upstream | 357577 | 318129 ~ 319418 (+) |
| CI01000012_00194370_00195347 | HCAR1-3 | coding | upstream | 481319 | 193903 ~ 195676 (+) |
| CI01000012_00886127_00889703 | NA | coding | downstream | 206648 | 885120 ~ 890337 (+) |
| CI01000012_00979848_00986445 | NA | coding | downstream | 301376 | 979848 ~ 986745 (+) |
| CI01000012_00991831_01027918 | NA | coding | downstream | 312703 | 991175 ~ 1028035 (+) |
| CI01000012_01054663_01055748 | NA | coding | downstream | 376191 | 1054663 ~ 1058353 (+) |
| CI01000012_01060250_01062758 | NA | coding | downstream | 381713 | 1060185 ~ 1062758 (+) |
| G68719 | NA | non-coding | upstream | 17527 | 659203 ~ 659468 (+) |
| G68699 | NA | non-coding | upstream | 42381 | 634409 ~ 634614 (+) |
| G68694 | NA | non-coding | upstream | 44800 | 631982 ~ 632195 (+) |
| G68690 | NA | non-coding | upstream | 49377 | 627183 ~ 627618 (+) |
| G68653 | NA | non-coding | upstream | 88575 | 588037 ~ 588420 (+) |
| G68726 | NA | non-coding | downstream | 7176 | 685648 ~ 686150 (+) |
| G68731 | NA | non-coding | downstream | 11576 | 690048 ~ 691318 (+) |
| G68740 | NA | non-coding | downstream | 25405 | 703877 ~ 705039 (+) |
| G68750 | NA | non-coding | downstream | 54376 | 732848 ~ 733205 (+) |
| G68753 | NA | non-coding | downstream | 64730 | 743202 ~ 743914 (+) |
| G68660 | NA | other | upstream | 141042 | 535566 ~ 535953 (+) |
| G68282 | NA | other | upstream | 616463 | 26390 ~ 60532 (+) |
| G68725 | NA | other | downstream | 5051 | 683523 ~ 684856 (+) |
| G70029 | NA | other | downstream | 1944006 | 2622478 ~ 2631385 (+) |
| CI01000012_04424569_04425090 | NA | other | downstream | 3741767 | 4424569 ~ 4425756 (+) |
| CI01000012_04495631_04501066 | NA | other | downstream | 3819981 | 4495631 ~ 4501066 (+) |
