LOC103031870


Basic Information

Item Value
gene id LOC103031870
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 26921084 ~ 26926573 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236228.3
CCTTTTACGATATAACGGGGAAGCTAGAAAGTGGGCAGGCTTGCTATAAACCAGCTGTGGCAACAACATAGCTGGATACACTGAAGTGGTCAATCTTGCGACGGAGAGCCTAGAGGGACAGTTTGCGCTTCAAAAAAAAGGCGAAAACCGCTGCAGTAGATCGAGGATGGAGAGGGGAGGTGTGCTGTGAGTTAACTACAGTAGTAAAGTCAGTCTGAGGGTTTAAAGAGGCGTTAGGGAGTCAGGTTAGTCCGGAGGTCGCCCTGTTTAGATTTCCTTAGGAATAACGTGAGAGTGGTAAGGGGAATTAAACAGGGAGCTGTGTGAGATTATGATTATGGAGCCGTGGAAAAGTCACGTGCGGGCCAAGCTGTTTCAGAGGGACTGTTTACAGAGAGAGCCCTTCTCTGGACTCTTTAATAAAGTGTCCAGGTTAGAAGACATGCTAAATCTGCACGTGAGTTTATTGGAGGACTTGGAAAGAAAGAGttcaaatcaaaatggaataaaaaagcAGGTTGAAGAAGAAGCCCCTCCAAAACTGTGTCTGGAGTTAAGAGAGGCCCAGCATGACAGAGAAGAGCTGATACAGAAAGTCTCAGACCTCACCAGTGTTCTTTACCTCAAAGAAGCAGAGCTGCAGTACTGTCACTCACAAGTCGCCCGATTCCGCAGCGAAGCCGTTCTGCTGGCTAAAGGAGCGTCCTTACTGAAGGATGATCTGTCGGAGTATCAGTATAAACTGGAGTGTCAGTCTAAGGAGTTGGCAGCATTGAGGCTGGAGCACAAGAATCTGAAGGAGGATCTAGCGGTTACGCGtcaggaaagggaggagctgcTTGAGCGCTGGttagaagagaagaaagaagaggCGGAGCGTCTTAATAAACACAATGCTACTCTAGAGAGATGGAATCGTTTTGCTGGTCGACTGAAAAAACGTCACAGTGGAGGATGTTGTCGACAGAAGTGTGCAGCAGCTACAAATTGCCCAAGAATCACACAGAGACATTCAGCTGATCAGCCTCTGCCAGACATAAGTGAatgagtatttatttaattctattCAGTTTATTAAGAATGTGCATCTCCTGCATTTTGCTATAGTGTCTTGGCTTGTATGGAATTTGTCTTCATAAGCAGGTCTGTACTTTTACTGCAGATGTACTGTGAAAATATAATTCTTGTCAGTTGtattgtacaataaaataaacaaaaaaaaa

Function

GO: NA

KEGG:

id description
ko03020 RNA polymerase
ko04623 Cytosolic DNA-sensing pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236228.3 True 1223 mRNA 0.45 6 26921084 26926573

Neighbor

gene id symbol gene type direction distance location
LOC103026857 LOC108424542,LOC101883815,LOC107702789,LOC107586167,LOC107675994,LOC107554304,LOC108277076 coding upstream 11861 26902839 ~ 26909223 (+)
LOC103026363 LOC108424538 coding upstream 18755 26897470 ~ 26902329 (+)
LOC103025645 LOC108424540 coding upstream 24897 26880649 ~ 26896187 (+)
nle1 nle1,LOC107720672,LOC107708614 coding upstream 127584 26783048 ~ 26793500 (+)
LOC103021428 LOC108410728,LOC108277327 coding upstream 230082 26081795 ~ 26691002 (+)
sytl2 sytl2 coding downstream 14778 26941351 ~ 26972401 (+)
crebzf crebzf coding downstream 56677 26983250 ~ 26988348 (+)
LOC103046108 dlg2,LOC107747009 coding downstream 67023 26993596 ~ 27443231 (+)
hyou1 hyou1,LOC107577052,LOC107691632 coding downstream 569542 27496115 ~ 27510446 (+)
crtam NA coding downstream 627629 27554202 ~ 27560568 (+)
G179345 NA non-coding upstream 31985 26884416 ~ 26889099 (+)
G179335 NA non-coding upstream 68101 26852695 ~ 26852983 (+)
G179320 slc25a1a,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324,LOC108276564,LOC105890537 non-coding upstream 121882 26794403 ~ 26799202 (+)
G179239 NA non-coding upstream 519817 26401008 ~ 26401267 (+)
G179183 NA non-coding upstream 952292 25964643 ~ 25968792 (+)
G179390 NA non-coding downstream 128376 27054949 ~ 27055164 (+)
G179399 NA non-coding downstream 179730 27106303 ~ 27106693 (+)
G179404 NA non-coding downstream 224541 27151114 ~ 27240082 (+)
G179416 NA non-coding downstream 295329 27221902 ~ 27232612 (+)
G179371 NA non-coding downstream 518204 27444777 ~ 27447272 (+)
rnasek rnasek,LOC107554319 other upstream 4740 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 42001 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 1663615 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 2466462 24447792 ~ 24454622 (+)
G178485 NA other upstream 3956095 22963447 ~ 22964989 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 597729 27524302 ~ 27525441 (+)
G180235 erg other downstream 4212771 31139344 ~ 31151095 (+)
G180266 NA other downstream 4506625 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 5338425 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 6123669 33050242 ~ 33067932 (+)

Expression


Co-expression Network