tmem150c (tmem150c,LOC107558260)


Basic Information

Item Value
gene id tmem150c
gene name tmem150c,LOC107558260
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22468437 ~ 22476305 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007241060.3
CTGTAAACCACCACAGTGCTCCTGTTAAACCCAGCCCAGCTCAGTCCAgtccaggctgctgctgctggtagcTGAGGTGAACTAATCTGATACAGGCACGCTGGCTAAACGCTAGTCCCAGCCCCAGCCCCAGTCCCGCCGCCAGCGGCAGCTCATATCTGGACCCCCGCGGTTCACACGGCGAGAAACCTGCGTCCAGCCGACTCCTCCACAACACGGAGCGGGGTCTTCATGAGATGAGGAGAGTACGAGGAACGCACAGCCATCAGGAGCGGACTGTTTACAAGACTGATCCCACCCTAAACACAAGGGACCGTCTAGTTTCTTGAGGCTGGACAGGAATCATTCATCAGGAGACATGAGAAAGTGCAGTCCGTGGACGTTTCTCCCGATTATGTTTTCGTTCTTCACAGCAGCAGGCTTGTGGGTCGTGTATTTCATAGCAGTGGAGGATGAGAAAATCACACCGCTTAGCTCCGAATACAAGAGATCTGTGTCCAAGTCCCCTCCCTACATCAGCATTGCAGGCGATGCTCCACCCGCCAGCTGTGTCTTCAGCCAAGTCATGAACATGGCAGCTTTTGTGGGTTTCATCCTTGGGGTACTCAGATACCTGCAGCTCAAACCAAGGGTGCACAAACCCTGGCTCAACATTGGCAGTCTGGTAGCTCTGTCCTTGGCCTGCTTTGGTATGACTTTGGTTGGGAATTTCCAGCTGTCAAATGATGAAGAGCTCCACAATATTGGCACCTCAATGACCTTCGGACTAGGCACACTGTTTTGTTGGGTCCAGTCCTTCATGACTTTAAAGGTCAACTTGCGTAATGAAGGCAGACGAGCTGGCATTCCCCGCTTCCTGCTGTCCGGAGCGGTCACGTCCTGCATGCTGCTTTACTTTGCCTTAATGGCACAGCGGCTGCACATGCATGCTGCCCGGGCACAGTGGGCGCTGGTCATGTTCTTCCTGACGTTCCTGGGCACCTTTGCTATCGAGTTCCGTCACTACCACTTCGAGATTGTGTGCAGTGATGACCAGGACCCTCCACTGAGCCTGTCTGAAAGCTTCTCTGAGGTCTCAGAGTACCAGTCTGACCAGCTATAAGACTATTTCCGTCCCATTTCTAACCGCAGGACTTCCAGGTCCTTCCACTTACAGTGCTCGTCAATTCCCACTAATGCATGTATGTTGAATGTAATCTCTCCAGGGTTCTCTGTgagtgtgttgttttttattacaaCAATGTGTAGGTAGACTTTTTTGcgacaaaacaatgaaaaaagcaCAAGAGGTGAACAGACACCATTTCTGAGCCACAGTGGGTTTTTTGTATTGCTGGGGTGACATAATGTAATGTCTGAAAATGCGTAGTACACTCATCGTCAAAGAGATggttgcaaaaatagttgcacccagaaggaagtatCGGAATGCAGTGCTGTTCGGAAGGAAAATAACCAAGGTTAccaagaacaataaatgattaaaacata

Function

symbol description
tmem150c Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TMEM150C (transmembrane protein 150C).

NR:

description
transmembrane protein 150C

GO: NA

KEGG:

id description
K21846 TMEM150; transmembrane protein 150

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007241060.3 True 1491 mRNA 0.50 9 22468437 22476305

Neighbor

gene id symbol gene type direction distance location
sec31a sec31a coding upstream 14826 22421362 ~ 22453611 (+)
LOC103047607 LOC103047607 coding upstream 133894 22322720 ~ 22334543 (+)
grin3a grin3a,LOC107750958,LOC107710005,LOC107702562,LOC107554227,LOC104941214 coding upstream 503729 21932331 ~ 21964708 (+)
musk musk coding upstream 1099163 21326212 ~ 21369274 (+)
cst8 NA coding upstream 1172588 21285246 ~ 21295849 (+)
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding downstream 33583 22509888 ~ 22515585 (+)
LOC111195066 NA coding downstream 43114 22519419 ~ 22528083 (+)
ankrd55 ankrd55,LOC107670032,LOC107737049,LOC107702571 coding downstream 363203 22839508 ~ 22863383 (+)
il6st NA coding downstream 388836 22865141 ~ 22880314 (+)
slc38a9 slc38a9,LOC107670042,LOC107564110,LOC107740785,LOC107566906,LOC107715861 coding downstream 432488 22908793 ~ 22928244 (+)
G178320 NA non-coding upstream 72240 22391198 ~ 22396197 (+)
G178310 NA non-coding upstream 81776 22339979 ~ 22386661 (+)
LOC111195069 NA non-coding upstream 86859 22380610 ~ 22381578 (+)
G178289 NA non-coding upstream 154143 22313170 ~ 22314294 (+)
G178282 NA non-coding upstream 365391 22102749 ~ 22103046 (+)
G178344 NA non-coding downstream 40226 22516531 ~ 22524073 (+)
G178368 tln1 non-coding downstream 128690 22604995 ~ 22605572 (+)
G178381 tln1 non-coding downstream 153606 22629911 ~ 22671830 (+)
G178392 map3k1,LOC107670047 non-coding downstream 231443 22707748 ~ 22708401 (+)
G178394 map3k1 non-coding downstream 237432 22713737 ~ 22720806 (+)
LOC103025565 scd5 other upstream 2708 22456319 ~ 22465729 (+)
LOC103046694 LOC108440723,LOC108277161 other upstream 153130 22127121 ~ 22315307 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 2069272 20396377 ~ 20399165 (+)
G177950 NA other upstream 2328873 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 2371726 20089238 ~ 20096711 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 10518 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 17135 22493440 ~ 22502159 (+)
G178352 NA other downstream 68335 22544640 ~ 22546130 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other downstream 212696 22689001 ~ 22709557 (+)
G178485 NA other downstream 487142 22963447 ~ 22964989 (+)

Expression


Co-expression Network