sec31a (sec31a)


Basic Information

Item Value
gene id sec31a
gene name sec31a
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22421362 ~ 22453611 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007241062.3
GGGCAGTATTGTGCCACGTTGATGGAGGAGGCCAGTGGGGACGTGGAACTGTTCCTATGTGTAACCGGGCTAGCCGCTGACTCTCTGCACACAGTTTACTAACCCGAGAAAAAGGATTTCTGAGCCGCTGATTAAAGTTTTACCCTGTTCAGACCGCGTGGATGAGCTGTGCATGCCTGTGAGCAGCGACCAGAGGGAAGGATGAAGCTGAAAGAGATAAACCGCACTGCCATACAGGCTTGGAGCCCGGCACAGCACCACCCCATTTACTTGGCAGCAGGCACGTCTGCTCAACAGCTCGATGCTACCTTTAGCACCAATGCCTCCCTGGAGATCTTTGAACTGGACCTGGCCGAGCCCAGTTTGGCCATGAAGTCGTGTGGTGCTTTCTCCTCACCTCAAAgATATCACAAACTAGTTTGGGGCCCACATGGGATTGATGAGCACGGGCAGCCCTCTGGAGTTCTGATTGCTGGAGGAGAGACGGGCAACATTATCCTTTATGATCCCTCCAAGATCATCGCGGGAGACAGTGAAGTAGTTATTGCAGAGAGTGATAAACACTCAGGGCCTGTTCGAGCTCTCGACGTCAATCATTTTCAGTCGAACCTGTTCGCCTCTGGAGGAAATGAGTCAGAAATCTACATCTGGGACTTGAACAGTTTTGGCACACCGATGACTCCAGGACCGAAATCACAGCCTCTGGAGGACATTAGCTGCGTGGCCTGGAACTGCCAAGTACAGCACATCCTCGCCTCAGCCAGTCCCGGAGGGAGAGCGTCCATCTGGGACCTAAGAAAGAATGACCTCATCATCAAAGTCAGCGACCACAGTAACAGGATGCATTGCTCTGGCCTGGCCTGGAACCCAGAGGTGGCCACTCAGCTGGTGGTGGCCTCGGAGGACGACCGCATGCCTGTTATTCAAATGTGGGACCTGCGCTTTGCCACTTCCCCACTCAAAGTCCTGGAAAACCACACAAGGGGTGTCCTGGCCATTGCTTGGAGTCTGGCTGACCCTGAGTTGCTGCTGAGCTGTGGGAAAGATAACCGTATTCTGTGCTGGAACCCAAACACTGCTGAGGTTCTTTACGAGCTTCCCACCAGCTCTCAGTGGTGCTTTGACATCCAGTGGTGCCCCAGGAACCCAGCTGTGCTGTCTGCCGCTTCTTTTGATGGACGGATCAGCATCTACTCTATAATGGGAGGCAGTAACGATGCCGTCAACACTGCACAGGCTGATCAGTTAAGTTCCTCGTTTGGCAACATGGACCCCTTCGGCACAGGCCAGACCTTGCCACCGCTGCAGCTGCCTCAAGCCACCCCCACAAACAACACCATCACACCGCTGAAGAAACCACCCAAGTGGCTCCGCAGACCAGTAGGATCTTCGTTTGCTTTCGGTGGTAAACTCGTCTCTTGGGAGAATATTAAACCACCACCGCAGCAACCACAGCAGGCCGTGCCCCATGTTGTGAACATCAGCCAGGTAGTCACTGAAACAGACTTCTTAGACCGCTCCAGCCAGCTTCAGTCCACCCTCACTGCAGGAAGCTTCGTGGAATTCTGCCAGACGAAGATTGAAGCTGCTCAGAATGAGTTTGAGAGGACCGTTTGGGCTTTTCTAAAGgttcagTTTGAAGATGATGCTCGGGGAAAATACTTGGAGCTTCTCGGGTACAAGAAGGAGGAACTAGCACTGAAGATTGCATCAGCATTAGAAGGGAGAGACCACAAGTCAGATGAAGCCAGTGAGGCTCCTCCCACATTCCCACCTTCCACTGTCACTCAGCAAACCACGCCAGAAATGGACTTGATTCCAGTGGCTGAGCCTCACGCTCTTCCCGAGTTGGACCTCATTCCACCTGTTAACGGTGAGCCAGAacctgagctggagctgaacgCTGTTCCTTTGGATGAAGAGGAGTCCGGAAACGTTGACGTAACTGCTGATGCACCAGAGGAGGAGGCAGCACTGGAGGAGGAGGAGAAAAATGGACCCatggaagaagaggaggaggctccagcagctgaagAGAGCCAAACACTGGAGGAGATCCCTGTTGCTGAAGAGGAACCTGTTGCGGATCAGATCCCTGTACTTGAAGAGACCTCGTCTCCATTCCCAGAAACTGTTAGCAGCAAAGCTAGCCAAgATGTAGATAGGCTGATCACCCAAGCGCTGCTTATTGGGGACTTCGAAGCTGCCGTCAACCTCTGCCTTCATGAAAACCGAATGGCAGACAGCATCATCCTGGCCATTGCTGGAGGGCCAGAGCTGCTTGAGAAGACTCAGAAAAAGTACTTGGCCAAGACTCAAAGCAAGATTGGCAAGCTCATCAGCGCAGTGGTGATGAAAGACTGGTTGGATATTCTTGAGACGTGTGATCTCCACAACTGGAAGGAGGCTCTGGCTGCAGTCATGACCTACGCCAAGCCAGAGGAGTTCTCCACCCTCTGTGGGCTGTTGGGCTCCAGGCTGGAGGCTGCTAATGATGCAGAGCTGCAGGCGCAGGCCTGTCTCTGTTACATCTGTGCAGGCAGTATGGAGCAGCTGGTGTCTTGCTGGTCCAAAGGACAGGAATCCTGCAGCCCACTCTCACTGCAGCACCTGGTTGAGAAGGTGGTGGTTCTGAGACAGGCTGTGGAGAAGGCTCAGGGTGGTGTGGCTCCTGCTGTGGGCGCCCTGCTGGCAGAGAAGATGAGTCAGTATGCCGGCCTGCTGGCTTCTCAGGGCAGCCTACAGACTGCCCTCTCCTACCTACCCACCAACACCGAACAGGTTGCAGTGCAGCAGTTGCGTGAACGTCTGAGCAGGGCTCTGGGTCTGCATGCCGCGGTCCAGGCGGCCCCCGCTGCACCAGTGCAGAACAGACAGCCTGTAGCCGTTCCTCAGCAGACCTACCTGCCAGTCCAGCCCCAGCCTCAACAACTGCCGCCTCAGCCCACACCTGCTGCCCCCATACAACAGTATTACCAGCAGGCTAGGGCCGCCTCTACTGTCACTTCCTGGAGTGACCAAACCCCAACAGTTCTGCCCAGTGTCCCTCGTCCGCTAGCCCCAGCAAAAGACCTCCAGGCTGATCCAGCATCATATGGTTTGCAGTCTCCAGTGAGTGCTAGTCCCACTGCAGCCAATCCATTCATGTACTCCCAGCAGTACCAGACCTACCCCCAAGTCCAGCAGTTCACACCTGGTGCTGGGGGACCTTCTCTCTATCAACCACTCCAGTACTCCTCTTCTACAGCCTCTGCTCTTCCTCCTCCACCTTCACCCTCTGCGTCTGCTCCTTTCTACCCTTCCCAGTTCATGCATCCTGCTTCATCTCAGCCTGCGCCTCCGGCCTTCCCCGGGCCTCCTCCACTCATGGCGGGCCAGACGGGCCCTTCtgtgcctcctcctcctctctcctcctcctcctctaccTTCTCTCCTCCTCCCTTCTCTTCCGGAGTCTCCTTCCAGCACGGCGGGCCGGGTTCACCCACCGCCTACCTTCCACCTCCACCCACTGGAGCCTCAGGTACACAGGCTGAGCCCGCCCTCATCCCCGCCTCACAGAGAACAGGGGGAATCATCCAAGATAGCTGGTTCTTGGAAGGGCCCCAGAATGGATGGAACGATCCTCCAGCTCTTAGCAGAGGCCCCAAGAAGAAGAAGGTCCCAGAACACTACACTCCTCCTGCTCCCATCACAGCACCCATCTTGGCTCCGCTGGGAGACCCTCAGCAGGCAGCCCCTGCGCAGCCTcctcagcaacagcagcagccacAGCTCCCAGGACAGCCGGCTGGAGCTCCTCCACCATTCACCCCCATCCAGCAGCAGCCAATGGTTCCAACGGTCAGAAACCCTGCTATGCCCAGCATGACTATAGAAGGGGCACCTGGTGCTCCCACTGGAGGGGTCATACAGCCAATGCAGTCGCTGCCTTCTGAGAAGATCATGAAGAAGCCCATCCCAGATGAGCATCTCATTCTAAAGACGACGTTTGAGGGTCTGATCCAGAAGTGTTTGGCTGCCGCCACAGATCCGCAAaccaagaggaagctggatgatgcTAACAAGAGGCTGGAATCCCTTTATGACAAATTACGAGATCAAACACTTTCTCCAGCCATCGTGGGTGGTCTCCACAACATAGCTCAGAGCATCGAGTCCCGCTCCTACACTGATGGCCTGAACATGCACACGCACATCGTCAGCAACAGCAACTTCAGCGAGACCTCTGCCTTCATGCCAGTCCTGAAGGTGGTGCTAACACAGGCTAATAAGCTGGGAGTCTGATCTCGCGCGCACGCACACTACTTACTACTCAATACCAGTATTCCCGCTCCAACACAAGCCATCCGTCAATAAGGACCAACTGATATTGACATGTACCGCCAGTCTTATCAGAGCTGGAATCGGGCATTCCAGTTTACAGGCTTTTTCTTTAAGATtcaattttatgttttgtttatgtcgccattattttataaatgtgtaatcaTGGCAGAGCAGAGTGCAATGGGGagatttcccttttttcttttttgaaaatTCAAAGGCATGTTATGAGTCAATGCAAGGTTAAGGCATCTGATATGAGATATAAGATGTGTATGGTAAGACAGAATTTACAGGTTTTTCTCATGTAATTGAGCTTTCAAACATTtgcatttttagctttttttttgttcatgtcTTGTCTAAATTAATTTAGCCTATTGATGTGTATGGTTGATTATCCAAAGCTTTGCCATTTCTGTGATGTTTAATGCAATCCCCCACATTATTGCATCTGTTGACCAGGATGGATATAAAATCTCAAACAAGCAGATATTttcaataaatgttatttatttaaagcttttaaattttgatttaatATCAATAGCTAAACAGAGCTAGTAGATCAATGTTTCTCCTTAAGGTTTATGAAGCTgcctagttttttttgttttaaaatcttGAAGAAACCACACAATGCATTAATAGTTCTGATCAATCACTTTAATTCAGTAGGATTTACGAAACATTTCTGAAAACGGAGGAGAAGACGAGCACTGTACATCGTACGGGATGGTTCTCTCTCAGATCAAGCATTGGTGATGTTCACCATAAAAGGGaaagttgctgttgttgttgtcttCAGTCTCCAGGATCACCTGAGTTTTGAGATATTATATGTTGTATATTCTCAACTTGCCTTATGATAGTATGTTAGAGCCACTGGTTTTTCGAACACTAAGTCAGAGTTTGCGGGAATGTCTGAGAGAAGATCTCTTACTGCTGGTCACTGACTGATTCTGTCTACAACTTTTCACGTTTTGTACGTGAAGGCTGCAGCGCTTCATGTGCAACCTTTCACTTGGAGGGTTTTAGTGGACAATGTTTAAAAgaatattgtacatttttgaAGGTGGATGTTTCATTATAAGCCAGTTGTCAAATAAATTGATAAACATTTCTCAGAA

Function

symbol description
sec31a Predicted to enable structural molecule activity. Acts upstream of or within digestive system development; endoplasmic reticulum organization; and liver development. Predicted to be located in COPII-coated ER to Golgi transport vesicle. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Is expressed in several structures, including alar plate midbrain region; axis; digestive system; fin; and midbrain. Orthologous to human SEC31A (SEC31 homolog A, COPII coat complex component).

NR:

description
protein transport protein Sec31A isoform X3

GO: NA

KEGG:

id description
K14005 SEC31; protein transport protein SEC31

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007241062.3 True 5459 mRNA 0.51 30 22421362 22453611

Neighbor

gene id symbol gene type direction distance location
LOC103047607 LOC103047607 coding upstream 86819 22322720 ~ 22334543 (+)
grin3a grin3a,LOC107750958,LOC107710005,LOC107702562,LOC107554227,LOC104941214 coding upstream 456654 21932331 ~ 21964708 (+)
musk musk coding upstream 1052088 21326212 ~ 21369274 (+)
cst8 NA coding upstream 1125513 21285246 ~ 21295849 (+)
LOC103023250 NA coding upstream 1162775 21203262 ~ 21258587 (+)
tmem150c tmem150c,LOC107558260 coding downstream 14826 22468437 ~ 22476305 (+)
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding downstream 56277 22509888 ~ 22515585 (+)
LOC111195066 NA coding downstream 65808 22519419 ~ 22528083 (+)
ankrd55 ankrd55,LOC107670032,LOC107737049,LOC107702571 coding downstream 385897 22839508 ~ 22863383 (+)
il6st NA coding downstream 411530 22865141 ~ 22880314 (+)
G178320 NA non-coding upstream 25165 22391198 ~ 22396197 (+)
G178310 NA non-coding upstream 34701 22339979 ~ 22386661 (+)
LOC111195069 NA non-coding upstream 39784 22380610 ~ 22381578 (+)
G178289 NA non-coding upstream 107068 22313170 ~ 22314294 (+)
G178282 NA non-coding upstream 318316 22102749 ~ 22103046 (+)
G178344 NA non-coding downstream 62920 22516531 ~ 22524073 (+)
G178368 tln1 non-coding downstream 151384 22604995 ~ 22605572 (+)
G178381 tln1 non-coding downstream 176300 22629911 ~ 22671830 (+)
G178392 map3k1,LOC107670047 non-coding downstream 254137 22707748 ~ 22708401 (+)
G178394 map3k1 non-coding downstream 260126 22713737 ~ 22720806 (+)
LOC103046694 LOC108440723,LOC108277161 other upstream 106055 22127121 ~ 22315307 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 2022197 20396377 ~ 20399165 (+)
G177950 NA other upstream 2281798 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 2324651 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 2645571 19750942 ~ 19775791 (+)
LOC103025565 scd5 other downstream 2708 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 33212 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 39829 22493440 ~ 22502159 (+)
G178352 NA other downstream 91029 22544640 ~ 22546130 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other downstream 235390 22689001 ~ 22709557 (+)

Expression


Co-expression Network