cnih2 (cnih2,LOC100706298)


Basic Information

Item Value
gene id cnih2
gene name cnih2,LOC100706298
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12144051 ~ 12151050 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007241259.3
agagagagagagagagagagagagtaagaggggAAGCCAGGGAGCTCCCCCTGCCCCCTCCAAGAAGGGAAGGCGACAGAAAGCAGGACGAAGCGAGAattacagagtgagagagagtcagactGTTGAACAGAACACATCACAGAGTGAGGGAAAAgcgaaacagagaaagaaacaaagagctGGTCCGAtttagagaggaaaagaaaaagcgTGGGGGTTGAGACAGACAgaacgagagagcgagagagagagagagagagagagagcgtgcgaCTGaggggagaaagaaaaacattactCCTGTGCGGGTTCTGAAATTCAGATCTGGATTTTTTGCTGAAAATCACAGAAGAACCAAAGCTGCGCTCTGACAGGCGACCCGCGTTATCTGCCAACATGAGGAGAGAGACGACACCCAGACACCATAGCTTTCAAACAGAAGAGGATCTAATAGCTAAAACCATCAAGTCAGTTTAGAGAGAGTGTCAGATTGTACTGGCTAGAGACTGACTGAAGTTAACGTAGTGAGATAGAAGGAGGCagacagaagaagagagagagaaggagcaagagagagaaaaagtgggGTAGAGTGCAGTTAGTGAGTAAGACAGTtaaagtacagagagagagagagggtgggggtgtttagccctctctctctcgccctgtGTGTACGGCAGGCTGGCTGGAACGGTCATGGCCTTCACCTTTGCGGCCTTCTGCTATATGCTAACGCTAGTGCTGTGTGCCGCACTTATCTTCTTCGTCATCTGGCAGATCATTGCCTTCGACGAGCTTCGTACAGACTTCAAAAACCCCATCGATCAGAGCAACCCCACCAGAGCGAGGGAGAGAATTTTGAACATCGAGAGGATCTGTAACTTGCTGAGAAGGCTGGTGGTTCCAGAATATTCCATACATGGTCTGTTCTGCCTCATGTTCATGTGTGCGGGTGAGTGGGTCACCCTGGGCCTCAACATCCCACTGCTCTTCTATCACCTGTGGAGGTTTTTCCACCGTCCAGCGGACGGATCAGAAGTCATGTATGATCCCGTCAGTGTGATGAATGCAGACATCCTGAATTACTGCCAGAAGGAGTCTTGGTGCAAACTGGGTTTCTACCTGCTCTCCTTCTTTTACTACCTGTACAGtatggTGTATGCGCTGGTCAGTTTCTAATGAGGAATGGACagaagaaatgaagaaagagaagaaatggACCATGCAACAAACCCTGCCTCATCTCCTCCATCCTCCTATTCTCCAGATCAGAGAGTTTCACCATCTTTCAAACAGAAATGGGCACCAGAgaaaccaaaacacacccatcgACACATACGCAGGGAGAAAAAGAggatgaaagagagagggaaatgaAAAACAAGAGGGAGAGCGAGGCAGGCTCAGGAAACGTTGATGTTCTGTAACAGAGATTTTCTTTCTAAAGGGCTGCTGAACATTTCTGCTGCGCAGAGCAACTCGAAGGGTCTTCAACCGCAATGAGATTTAAAACGTAACTTCAGAATTTGATTGtctttgtttctctttattaatctaAACTACAGGTTTTATGTTCTGAAGTCTTTTctgaaaaaaactaattctagAAGACCTTTGTGGATAAAACAAACTTGTCTAGTTACAGTGTTAGAGGAgcatttaagtatttttgtGATAGATTACTTTAAAGCTGCCTGATCTGTAGGAGTTGATTATAAAGCGATTTATTCTCTTTAGCTcagttgtttttaaattttatagaataaactaGTGTCCACCAGATAAACTACTAGTACTGCACAAACTCCTGACTCCTGTAcaccctccaccatgtttacaGTGAAACTCAAAGCAAACGAACCAATGAAATAAGATCATCCAGGCCGGAGAAACTGTTGGAGTGACTTTTCAGAAGAGGGGTAATCAGAAACACTGTGGGAAACTGAAACAGATGGGTAGGCAGTCAGCAGTGGTCAGTTGTTCTGGTTTTGGATGCTCTGCCTTACACTCATTAAATACCATTACACTA

Function

symbol description
cnih2 Predicted to be involved in regulation of AMPA receptor activity. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite and synapse. Is expressed in basal plate midbrain region; brain; diencephalon; tegmentum; and telencephalon. Orthologous to human CNIH2 (cornichon family AMPA receptor auxiliary protein 2).

NR:

description
protein cornichon homolog 2-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20368 CNIH, ERV14; protein cornichon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007241259.3 True 2035 mRNA 0.45 7 12144051 12151050

Neighbor

gene id symbol gene type direction distance location
LOC111195107 NA coding upstream 48762 12090628 ~ 12095289 (+)
LOC107197312 NA coding upstream 150827 11988169 ~ 11993224 (+)
LOC111195033 NA coding upstream 204954 11935660 ~ 11939097 (+)
LOC103027020 nlgn2b,LOC108443341,LOC107678031,LOC107554306,LOC107720555,LOC101475673,LOC102787387 coding upstream 278135 11750213 ~ 11865916 (+)
LOC103023833 LOC107678029 coding upstream 810018 11324888 ~ 11334033 (+)
LOC111195108 NA coding downstream 163682 12314732 ~ 12316734 (+)
ptrh2 ptrh2,LOC107744620,LOC107548881,LOC107699263,LOC107693958,LOC107747021,LOC107576753 coding downstream 522828 12673878 ~ 12692133 (+)
LOC103039534 hmgb1a,LOC100304841,LOC108439208,LOC107653759,LOC107583338,LOC107578084 coding downstream 640173 12791223 ~ 12794193 (+)
katnal1 katnal1,LOC107741157,LOC107653760,LOC107578067,LOC107697436,LOC107743395 coding downstream 645066 12796116 ~ 12809169 (+)
ubl3 ubl3,LOC107741158 coding downstream 685680 12836730 ~ 12870232 (+)
G175201 NA non-coding upstream 74729 12065278 ~ 12069322 (+)
G175169 NA non-coding upstream 106240 11983263 ~ 12037811 (+)
G175160 NA non-coding upstream 194282 11948808 ~ 11949769 (+)
G175157 NA non-coding upstream 198156 11945397 ~ 11945895 (+)
G175085 NA non-coding upstream 242504 11890741 ~ 11901547 (+)
LOC111195036 NA non-coding downstream 36193 12187243 ~ 12189381 (+)
LOC111195040 NA non-coding downstream 63650 12214700 ~ 12217838 (+)
G175237 NA non-coding downstream 68196 12219246 ~ 12219689 (+)
G175249 ints2,LOC107744627,LOC107747027,LOC107693886,LOC107699256,LOC107578473 non-coding downstream 105544 12256594 ~ 12260820 (+)
G175250 ints2,LOC107744627,LOC107699256 non-coding downstream 145742 12296792 ~ 12297319 (+)
G175108 NA other upstream 230595 11908872 ~ 11913456 (+)
G174994 NA other upstream 707521 11429871 ~ 11436530 (+)
G174874 LOC108437803 other upstream 1124633 10832168 ~ 11019418 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 1512286 10621028 ~ 10631765 (+)
rexo2 NA other upstream 2990918 9126708 ~ 9153133 (+)
LOC103027177 tmem261,LOC103027177 other downstream 40306 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 373091 12524141 ~ 12540201 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 588453 12739503 ~ 12745053 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 1142248 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 1202718 13353768 ~ 13418416 (+)

Expression


Co-expression Network