nle1 (nle1,LOC107720672,LOC107708614)


Basic Information

Item Value
gene id nle1
gene name nle1,LOC107720672,LOC107708614
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 26783048 ~ 26793500 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007241491.3
ctccattcactctCAGTCATTGAGGGCtcgctcgcgggctccctctagcggtttgCAGGGATTTTCTGTGCGGAAGTGGGCCGCCTCGCTATTAACCAGCTCTTCTATGGCCACGACCTAAAGCCTCGTCATTCAGCCTGCGCCGCAGATCAGGTTCCGCACGTGTGGACCAACCGGAGCTAAAGCGCATCAGTTATAAAGTTAATAAgaaaCTGTGTGGCCAACGTTAAGAAATGAGTGGGGACGTGGAACGCATGCTGATCCAGTTTCAGGATGAAGGAGGTGAAGCTCTTGGATCCCCCTTTGACGTACCATTGGACATAACTCCAGATAAACTGCAGCTGGTCTGCAATGCACTGCTACAGAAGGAGGAGCCAGTGCCTCTGCTGTTCTTTGTGCGTGATGCGGAGGTGGTGTCATCCTTGGGTGCCTCAGTGCAGACTCTGGGTCTGGAAACAGAGCAGGTGCTGCCAGTGGTGTACCAGCCGCAGGCTGTGTTCCGCGTGAGGGCGGTGGCCCGTTGCACCAGCTCTCTTCAAGGACACACTGAAGCAGTTATCTCTGTAGCCTTCAGTCCCACTGGCAAATATCTGGCCAGTGGATCTGGAGATACTACTGTGAGATTCTGGGACTTAACCACAGAGACTCCTCATCACACTGCTAGAGGACACACACACTGGGTTCTGTCCATAGCCTGGTCTCCAGATGGCAAGAAGTTAGCATCAGGATGCAAGAACAGTCAAATTCTCCTCTGGGACCCAGTCACAGGACAGCAGATAGGAAAGGCTCTGACTGGACACACTAAATGGATCACTTGGCTTTGTTGGGAGCCTCTGCACTTGAACCCCGAGTGCAGATACTTGGCCAGCTCCTCTAAAGATTGCTCGGTTCGGATATGGGACACAGTCCTGGGCCGCTGCGATAAGATACTGACGGGCCACACACAGTCAGTCACCTGCGTGAAATGGGGTGGAGACGGCCTCCTATACACTTCTTCTCAAGATAGGACCATAAAAGTGTGGAGGGCGAAAGATGGGGTTCAGTGTCGGACCTTGCAGGGTCACGCTCACTGGGTGAACACGCTGGCCCTGAGTACTGATTACGTCCTTCGCACCGGAGCCTTTGAGCCAGCCACTGCTACAGTCAACCTTCAGGATCTTACAGGATCATtgGACGAGATCAAGGAGAGAGCTCTTAAGCGATACAACAAAGTCAGGGGTGAAGGTCCTGAGCGGCTTGTCTCTGGTTCTGATGATTTCACGCTGTTTCTGTGGAATCCGGCAGAAGAAAAGAAGCCTGTGGCCCGCTTGACTGGACACCAGGCACTAGTAAACGAGGTGTTGTTCTCCCCTGACACACGACTACTCGCCAGCGCTTCTTTTGACAAGTCCATCAAAATATGGGATGGCAAGACTGGCAAGTATCTGACTTCACTTCGGGGTCATGTGGCAGCCGTGTACCAAGTGGCCTGGTCAGCAGACAGCCGACTGCTAGTGAGTGGAAGCAGCGACAGCACCCTAAAGGTGTGGGATGTGAAGACGGGCAAACTGAACGTGGATCTGCCTGGACACGCTGATGAGGTTTTTGCAGTAGACTGGAGTCCTGATGGTCAGCGAGTGGCCAGTGGTGGAAAAGACAAGTGTCTACGGATATGGAGAAGGTAGTCGACAGCCTCTACTACCGTACTATTGATCAGCCGATCAGGCGCCTCACTGACTCCCGTACCCTTCATTGTCCAGTGGCCCACCTCTCAGGATGACGGACAGTGTGTCAGTTTGAGGAGACTTAACCTAATCACACAGTGCTCTCCTATGCACTGCGTCACCCGAGAGGACGTATGCAGTGCTTACGCACATGGCAGTGTCATGCCACAGCAGACGACGAGATAAACATGAGATAAACATGAGATCTGTCATGATGACGACTTGTTGGCTTTTCTTAATGCAATTTTGTTGTGGTAACTCAGTTAAAGGAGCAGCCAGCAGACCTGGTCCAACCTCTGTAATCTCCAGACACACACTGCTTGTAATTATTTAATCCCCAGCGAAGACTACCCAGCTTACAGGGATCTGTTCTGCTGCTGAGAAGATTACCTCCATTCATTCATTGAGAATAACTTACTGAGCTCGTAGTAAAAAGAATGTTACGGAAATAGATTTTtgtatgtctattttttttttaaagagggaCACTTAAACTAAGAAAATGTCATAATGGAAAAGTAATCTCTGCTTTATTATAAGTTACTGTGACACAGAAGCCTATATTTTTCACGtttgatgtttttccttttttgataTAATGTGCATTATAAACCCTTGAATTATTGTTCTA

Function

symbol description
nle1 Predicted to be involved in Notch signaling pathway and ribosomal large subunit assembly. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in alar plate midbrain region; nervous system; optic vesicle; and pharyngeal arch. Orthologous to human NLE1 (notchless homolog 1).

NR:

description
notchless protein homolog 1

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K14855 RSA4, NLE1; ribosome assembly protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007241491.3 True 2334 mRNA 0.50 13 26783048 26793500

Neighbor

gene id symbol gene type direction distance location
LOC103021428 LOC108410728,LOC108277327 coding upstream 92046 26081795 ~ 26691002 (+)
LOC103045760 LOC108410697 coding upstream 1139732 25625356 ~ 25643316 (+)
LOC103045464 pitpnab,pitpna,LOC103045464,LOC108276543,LOC105890453,LOC108237022,LOC108410689,LOC107386993 coding upstream 1165824 25589823 ~ 25617224 (+)
LOC103044955 slc43a2b,LOC103044955,LOC108410672,LOC108277386,LOC107701113,LOC107720664,LOC107684998 coding upstream 1196485 25557064 ~ 25586563 (+)
LOC103025709 NA coding upstream 1232952 25526543 ~ 25550096 (+)
LOC103025645 LOC108424540 coding downstream 87149 26880649 ~ 26896187 (+)
LOC103026363 LOC108424538 coding downstream 103970 26897470 ~ 26902329 (+)
LOC103026857 LOC108424542,LOC101883815,LOC107702789,LOC107586167,LOC107675994,LOC107554304,LOC108277076 coding downstream 109339 26902839 ~ 26909223 (+)
LOC103031870 NA coding downstream 127584 26921084 ~ 26926573 (+)
sytl2 sytl2 coding downstream 147851 26941351 ~ 26972401 (+)
G179239 NA non-coding upstream 381781 26401008 ~ 26401267 (+)
G179183 NA non-coding upstream 814256 25964643 ~ 25968792 (+)
G179177 NA non-coding upstream 904193 25878643 ~ 25878855 (+)
G179173 NA non-coding upstream 1011100 25771663 ~ 25771948 (+)
G179034 NA non-coding upstream 1301857 25459607 ~ 25481191 (+)
G179320 slc25a1a,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324,LOC108276564,LOC105890537 non-coding downstream 903 26794403 ~ 26799202 (+)
G179335 NA non-coding downstream 59195 26852695 ~ 26852983 (+)
G179345 NA non-coding downstream 90916 26884416 ~ 26889099 (+)
G179390 NA non-coding downstream 261449 27054949 ~ 27055164 (+)
G179399 NA non-coding downstream 312803 27106303 ~ 27106693 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 1525579 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 2328426 24447792 ~ 24454622 (+)
G178485 NA other upstream 3818059 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 4073491 22689001 ~ 22709557 (+)
G178352 NA other upstream 4236918 22544640 ~ 22546130 (+)
LOC103024073 LOC108424537 other downstream 37137 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 120250 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 730802 27524302 ~ 27525441 (+)
G180235 erg other downstream 4345844 31139344 ~ 31151095 (+)
G180266 NA other downstream 4639698 31433198 ~ 31433909 (+)

Expression


Co-expression Network