LOC103032234


Basic Information

Item Value
gene id LOC103032234
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 9645110 ~ 9646923 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244708.3
CAGCATCACTGGACAACAAGCGTATCGGCATCAACCAAGAGACTGAGGTCTATTTCAGATGGATAACGCAGACTACAGGCAAAACATCACGGTTCAGTACTGCTTCCCTGGACACAATGCATCTTGCAAAAAGGACGTCCGGACAGGCCCTGGATACAtcgttttgttcatttttctctcatgtatatctgtgtgtactgtgtttttgaacCTGGTGGTGAttatctccatctctcacttcaAGCAGCTCCACTCTCCAACCAACCTGCTCATTGTTTCTCTGGCTTCAGCAGATCTTCTCGTGGGAATGTTCGTTATGCCTGTGAAAATAATGCAACTGACAAACTCCTGTTGGTACCTTGGAAATATGGCCTGTATTGTCTTTCCAATAATCAACGGCCTCTCTGTGTTAGGATCTCTCTGCAGCCTGGATTTCATCGCCATTGATCGATATTTGGCCATCAGTGATCCTCTGCATTATTCTAGAAGAATCACTATGTTCAGAACATCTGTGTGCATATTTCTAGGCTGGTCCTTTTGTTTCTTGTATGTTGTTGTTTATATGTACTTTAATGACCATTTCCTGCCATCTCAGCTAACCACCAGATGTTACGGAGAGTGTTTCGTCTTCATAAAACCACCATGGGTGATGAGCAGCacctacatctttttttttttaccttgtacCCTTATTTTCGTCTTATACGCAGCCATTTTTCATGTTGCCAGACGTCAGGCTAAGGCTGTCAGAGCTGTGGTCAATGGAGCAGGCAAAGTTTCAGGCAAAGCTTCAGGCTCATCTGAAACCAAAGCAGCCAAAACACTGGGAATTGTCATTTGTGTTTACTTTGCATTCTGGATACCTTTTTACATCAGTTCCCTAACTGTTCAACGTTTGACCACTGTGTCAATGGTGTGGACTGTGTTCGGCTGGCTATCGTACATCAACTCCTGTATGAATCCACTCATTTATGCCATATTCTATCCATGGTTCCGAATATGTGTTAAGCATATTgtcacttttaaaatatttgaaacaTCATCTTCCAACTTTAATTTGTATAAGGAACATTAATAACCAGTGCTGGAAAGTTGAGCATCACAgagccttttttttctttctttccttttgtcACATTCTCATGTTTGTCGTTTCTCATGTTAAATATTCTGTATGTCTATCGTTTTCATCATATTTTAATCCAGCATTTATTGTTGTGTTGCAATGCAGGTTCAAAATTTCTGTTAAAATGACCTGGTATCTGCAATGGTCCTTTATTTTGAGATTGCTGGAGGGTAGCATGTGTAAATAATCTGTCCATAACAACAGCAGTGGTGTTCAGATATCTGCtgtatgaacacacacacacacacacacagaatgatgAAACCCACACCAACATGCATTTtctaaaatatgattttaatatgaaatgagtgcaacatttataacatttagcACAGTACTTATTTTCctgtataaattataatttgataaaattaaaaaataaataaaaaatattcctgTGGCCATATAGTGGTGCTGTAGAATGTAAACTGAACATTTGTAGATTAACAAATATGTAGTCACTGCAATAACTGCGTAGTATATCTTATCATGACAATAATAGTTAAACTTTTTCAGTTTTCTAAAGAGGCTTAACCGCGTAGTCAAATTGCGCAATTCTATTATGGAGCTTAAAagcccttatttttaaattgctactaaaacaaattattataaaaattaaaactaatttatttaaagttttttttttgtctgtgtaaGCATATGTTTTCTATCATCTATGTTG

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0007600 sensory perception biological_process
GO:0007606 sensory perception of chemical stimulus biological_process
GO:0007608 sensory perception of smell biological_process

KEGG:

id description
ko04740 Olfactory transduction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244708.3 True 1814 mRNA 0.37 1 9645110 9646923

Neighbor

gene id symbol gene type direction distance location
LOC111195020 NA coding upstream 2619 9641027 ~ 9642491 (+)
LOC111194972 NA coding upstream 17325 9626444 ~ 9627785 (+)
LOC103036148 gramd1ba,LOC107679517,LOC107730968,LOC108433258 coding upstream 146918 9354908 ~ 9498192 (+)
LOC103036746 LOC108433260,LOC105011014,LOC106567546,LOC108276559 coding upstream 331727 9206552 ~ 9313383 (+)
kirrel3 kirrel3,kirrel3a,LOC107730946,LOC107758686,LOC107565265 coding upstream 554317 8817587 ~ 9090793 (+)
LOC111194974 NA coding downstream 14001 9660924 ~ 9662061 (+)
LOC111194975 NA coding downstream 19118 9666041 ~ 9667743 (+)
LOC111194976 NA coding downstream 27360 9674283 ~ 9675427 (+)
LOC107197516 NA coding downstream 33462 9680385 ~ 9681455 (+)
LOC111195100 NA coding downstream 36981 9683904 ~ 9685135 (+)
G174609 NA non-coding upstream 271162 9371441 ~ 9373948 (+)
G174582 NA non-coding upstream 323767 9319390 ~ 9321343 (+)
G174583 NA non-coding upstream 330972 9313904 ~ 9314138 (+)
LOC111195017 NA non-coding upstream 503812 9140149 ~ 9141298 (+)
G174559 NA non-coding upstream 551014 9092441 ~ 9094096 (+)
LOC111195021 NA non-coding downstream 113629 9760552 ~ 9762446 (+)
G174719 NA non-coding downstream 173188 9820111 ~ 9820433 (+)
G174738 NA non-coding downstream 575787 10222710 ~ 10223083 (+)
G174783 NA non-coding downstream 664270 10311193 ~ 10311590 (+)
G174788 NA non-coding downstream 688983 10335906 ~ 10336194 (+)
rexo2 NA other upstream 491977 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 1092500 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 1478448 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 1719670 7904595 ~ 7925440 (+)
LOC103041160 NA other upstream 3103731 6536327 ~ 6541379 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 974105 10621028 ~ 10631765 (+)
G174874 LOC108437803 other downstream 1185245 10832168 ~ 11019418 (+)
G174994 NA other downstream 1782948 11429871 ~ 11436530 (+)
G175108 NA other downstream 2261949 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 2544433 12191356 ~ 12209449 (+)

Expression


Co-expression Network