LOC103044917 (LOC108435817)


Basic Information

Item Value
gene id LOC103044917
gene name LOC108435817
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 7739611 ~ 7759850 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244750.3
GAGTGGAGCCGGAGATCAGAGCAGAGAGCGCGCgagcggagagagagaaacacggagCAGGACTGGATTGAGCACTAATCCTCTACTAAGCGATATCTCCATCAGAGCTGGAGGTACAAAATCTGTGACGGTTTTAATGGATCTCCAAACTCACCCTGTTCCACCCTCAGACTGTTAGGAACTAAGGGACCTTACAGAGAGGTCAATCCCACCCACAGCATTATCCCACCTCTACCAAATGTTACAGGCTCACTGAATGTCATCTGTAAGAATATTGTAGGAGTTCAGTCATGGATCCAAACTTCTCCAAAGATTTAAGCTGAAGGCTTGCCTCTAACAGACGATGTGGACGATGAACTGACTGACCATGAGGAACGGAACATCCTGTAATCTCCAGCCTTGGCTCTACTGACCCTGCTAAGGCAGAACCAGGCTTTGGATCACTTCGGACAGCCTCAATCCTCCAGCTGAAAGGATGGCTAAGACTTTCTACAGGCTACAGCGTTTTTTAAGGCGGGCTCGCTTACTCCTCCTCTTCCTGGGTGTGGCTTACATCATGGCAGGAAGTGTCTTGCTGCTCCAGCACTCCAGCGTGGCCTTGTTTCAGAGAGGAACAGACACATCCTCAGCTTTGCCTTTTGTAATGGCGCCCTCCAGAGCCCTGGAGGTGCCGAATGATGGCTGGAGGTACAGGAGATCTGGATCCAGAGGGACTGAAGATATGGAGAACAGTGTGCTGGACCTGTCAGGCAGCAGAGCTGATCAGGAACGGTTCATGTCTCGCAACCTAAAGATCCGACACCTGAGACGCCACTGGATCCAGGGCCGGAGGTCGGAGCAGGAGAATGGAGCTGAGCACAGTCCATCACACAAACCTACCAGACATAAAGGAACCTACATTGGATGCTTCATAAACGATGACAAGCAGCAGCGTGCACTCGGGGGCACCGTGCTCTACGACTTCCGCAAAATGACCAGTTCCCTGTGTCAGGACACCTGCTCGGAGAGTGGGTACCAGTTTGCAGGTCTGGAGTATGGGACTGAGTGTCACTGTGGAAATCGGATCACTGCCCCCCGGGCTCGGAGCGAGGACTGCAATCTGGACTGCAGGGGGGAGAGAGGCTCCCCGTGTGGAGGCGTGGCCCGGCTGTCTGTTTACAAGGTGGAGGAGAGACTGCCCGGCCACAGGAGATacAGGAACGTGCACTACCATGGCTGCTTCCAGGCACTAAAGAACTCCAGCAATGGCTTCCTGGTCCTCACCAGCCAGACCAACCTGACCTTGCAGCTGTGTGTGGAGATCTGTACAGATAGGGAGCTGCCATTAGCTGTAATGAGGAGGCGGGAGTGTCTCTGTGGCCACGCCTCCTCTCTTCTGAAAATGCAGAAGATCATAGAAGGACACTTATGTGGGAGGAACAGTCctataaaccacacccactccAATGACAAGGACTTCCTGCAGGTGTACAGCACACCTGTGCTAGATTCGAGGTGTAAGGAGAGGACGTTTCTGCCTGAGCGGTCCTCCTCACTCACAGCTCTGTCCAGTTTTCCTGGAGCAGGAAACACATGGGTCCGCCACCTCATTGAACTCTCCACCGGATACTACACAGGCAGCTACTACTTTGATGGCTCTTTATACAACAAAGGCTTTAAGGGAGAGAAGGATTACTGGCGGAGTGGGAGAACGATCTGTGTGAAGACTCATGAGAGCGgtcagagagagatagagctgtTCGACTCTGCTGTCCTCCTGATCCGCAACCCGTACCGCTGCCTGGTCGCCGAGTTCAACCGCAAGTGTGCTGGACACCTGGGCTACGCCCCAGACACCCACTGGAAGAGCAAAGAGTGGCCGGAGTTTATGGACAGCTACGCCTCCTGGTGGGCATCGCATGTTCTGTCCTGGTTGAAGTTCTCGCGCCGTTTGCTGGTGGTACATTACGAAGTGCTCCAGATGGACCTGCTTCCTCAGCTGAAGCTCATTACAGCCTTCCTGAACGCCAGCATCCCAGAGCACAGGCTGCTCTGCGCCGAGAGTAACCGCGACGGTCATTTCAAACGCCCCGGCTCCCGCGGCCTGACCTTCGACCCCTTCACTCCGGACATGAGGACTCGGATAGACGGCTATATCCTCTCAGTGGACCGGGCGCTGAGGGACAGGAATCTGAGCGGCCTGCCCCAGGAGTACATGCCCAGATAATGAGGACGAGCGGATAAGTGATTAAACAGAGAGGGAAAAAAGTGCCTGTAAACCCAAGCTTGACTGACAGCTCTTCTCGTGGCCTTGAGGaggtttatttatttggcaGTTCATTATCACACTGGCGCTTtcacttctctttctttctgtctttctgttttccTCCGAGATTCACCTGCCACTCAAACAAAGGGGTGGCTTTATTTGTGGTTTGTGTGCATTAAAATCCTGCTGCCAATCTG
>XM_015604641.2
AGAGCAGAGAGCGCGCgagcggagagagagaaacacggagCAGGACTGGATTGAGCACTAATCCTCTACTAAGCGATATCTCCATCAGAGCTGGAGGTACAAAATCTGTGACGGTTTTAATGGATCTCCAAACTCACCCTGTTCCACCCTCAGACTGTTAGGCTCACTGAATGTCATCTGTAAGAATATTGTAGGAGTTCAGTCATGGATCCAAACTTCTCCAAAGATTTAAGCTGAAGGCTTGCCTCTAACAGACGATGTGGACGATGAACTGACTGACCATGAGGAACGGAACATCCTGTAATCTCCAGCCTTGGCTCTACTGACCCTGCTAAGGCAGAACCAGGCTTTGGATCACTTCGGACAGCCTCAATCCTCCAGCTGAAAGGATGGCTAAGACTTTCTACAGGCTACAGCGTTTTTTAAGGCGGGCTCGCTTACTCCTCCTCTTCCTGGGTGTGGCTTACATCATGGCAGGAAGTGTCTTGCTGCTCCAGCACTCCAGCGTGGCCTTGTTTCAGAGAGGAACAGACACATCCTCAGCTTTGCCTTTTGTAATGGCGCCCTCCAGAGCCCTGGAGGTGCCGAATGATGGCTGGAGGTACAGGAGATCTGGATCCAGAGGGACTGAAGATATGGAGAACAGTGTGCTGGACCTGTCAGGCAGCAGAGCTGATCAGGAACGGTTCATGTCTCGCAACCTAAAGATCCGACACCTGAGACGCCACTGGATCCAGGGCCGGAGGTCGGAGCAGGAGAATGGAGCTGAGCACAGTCCATCACACAAACCTACCAGACATAAAGGAACCTACATTGGATGCTTCATAAACGATGACAAGCAGCAGCGTGCACTCGGGGGCACCGTGCTCTACGACTTCCGCAAAATGACCAGTTCCCTGTGTCAGGACACCTGCTCGGAGAGTGGGTACCAGTTTGCAGGTCTGGAGTATGGGACTGAGTGTCACTGTGGAAATCGGATCACTGCCCCCCGGGCTCGGAGCGAGGACTGCAATCTGGACTGCAGGGGGGAGAGAGGCTCCCCGTGTGGAGGCGTGGCCCGGCTGTCTGTTTACAAGGTGGAGGAGAGACTGCCCGGCCACAGGAGATacAGGAACGTGCACTACCATGGCTGCTTCCAGGCACTAAAGAACTCCAGCAATGGCTTCCTGGTCCTCACCAGCCAGACCAACCTGACCTTGCAGCTGTGTGTGGAGATCTGTACAGATAGGGAGCTGCCATTAGCTGTAATGAGGAGGCGGGAGTGTCTCTGTGGCCACGCCTCCTCTCTTCTGAAAATGCAGAAGATCATAGAAGGACACTTATGTGGGAGGAACAGTCctataaaccacacccactccAATGACAAGGACTTCCTGCAGGTGTACAGCACACCTGTGCTAGATTCGAGGTGTAAGGAGAGGACGTTTCTGCCTGAGCGGTCCTCCTCACTCACAGCTCTGTCCAGTTTTCCTGGAGCAGGAAACACATGGGTCCGCCACCTCATTGAACTCTCCACCGGATACTACACAGGCAGCTACTACTTTGATGGCTCTTTATACAACAAAGGCTTTAAGGGAGAGAAGGATTACTGGCGGAGTGGGAGAACGATCTGTGTGAAGACTCATGAGAGCGgtcagagagagatagagctgtTCGACTCTGCTGTCCTCCTGATCCGCAACCCGTACCGCTGCCTGGTCGCCGAGTTCAACCGCAAGTGTGCTGGACACCTGGGCTACGCCCCAGACACCCACTGGAAGAGCAAAGAGTGGCCGGAGTTTATGGACAGCTACGCCTCCTGGTGGGCATCGCATGTTCTGTCCTGGTTGAAGTTCTCGCGCCGTTTGCTGGTGGTACATTACGAAGTGCTCCAGATGGACCTGCTTCCTCAGCTGAAGCTCATTACAGCCTTCCTGAACGCCAGCATCCCAGAGCACAGGCTGCTCTGCGCCGAGAGTAACCGCGACGGTCATTTCAAACGCCCCGGCTCCCGCGGCCTGACCTTCGACCCCTTCACTCCGGACATGAGGACTCGGATAGACGGCTATATCCTCTCAGTGGACCGGGCGCTGAGGGACAGGAATCTGAGCGGCCTGCCCCAGGAGTACATGCCCAGATAATGAGGACGAGCGGATAAGTGATTAAACAGAGAGGGAAAAAAGTGCCTGTAAACCCAAGCTTGACTGACAGCTCTTCTCGTGGCCTTGAGGaggtttatttatttggcaGTTCATTATCACACTGGCGCTTtcacttctctttctttctgtctttctgttttccTCCGAGATTCACCTGCCACTCAAACAAAGGGGTGGCTTTATTTGTGGTTTGTGTGCATTAAAATCCTGCTGCCAATCTG
>XM_022680991.1
CTGTGTGCGCGAGGATGTGATGTTTGGTGCTGGAGATCGGGGCTGGAGTTTAGAAGCACGCGGACAAACTGTTGCTCCAGCTTTCAGGactacagGACTGGATTGAGCACTAATCCTCTACTAAGCGATATCTCCATCAGAGCTGGAGGTACAAAATCTGTGACGGTTTTAATGGATCTCCAAACTCACCCTGTTCCACCCTCAGACTGTTAGGAACTAAGGGACCTTACAGAGAGGTCAATCCCACCCACAGCATTATCCCACCTCTACCAAATGTTACAGGCTCACTGAATGTCATCTGTAAGAATATTGTAGGAGTTCAGTCATGGATCCAAACTTCTCCAAAGATTTAAGCTGAAGGCTTGCCTCTAACAGACGATGTGGACGATGAACTGACTGACCATGAGGAACGGAACATCCTGTAATCTCCAGCCTTGGCTCTACTGACCCTGCTAAGGCAGAACCAGGCTTTGGATCACTTCGGACAGCCTCAATCCTCCAGCTGAAAGGATGGCTAAGACTTTCTACAGGCTACAGCGTTTTTTAAGGCGGGCTCGCTTACTCCTCCTCTTCCTGGGTGTGGCTTACATCATGGCAGGAAGTGTCTTGCTGCTCCAGCACTCCAGCGTGGCCTTGTTTCAGAGAGGAACAGACACATCCTCAGCTTTGCCTTTTGTAATGGCGCCCTCCAGAGCCCTGGAGGTGCCGAATGATGGCTGGAGGTACAGGAGATCTGGATCCAGAGGGACTGAAGATATGGAGAACAGTGTGCTGGACCTGTCAGGCAGCAGAGCTGATCAGGAACGGTTCATGTCTCGCAACCTAAAGATCCGACACCTGAGACGCCACTGGATCCAGGGCCGGAGGTCGGAGCAGGAGAATGGAGCTGAGCACAGTCCATCACACAAACCTACCAGACATAAAGGAACCTACATTGGATGCTTCATAAACGATGACAAGCAGCAGCGTGCACTCGGGGGCACCGTGCTCTACGACTTCCGCAAAATGACCAGTTCCCTGTGTCAGGACACCTGCTCGGAGAGTGGGTACCAGTTTGCAGGTCTGGAGTATGGGACTGAGTGTCACTGTGGAAATCGGATCACTGCCCCCCGGGCTCGGAGCGAGGACTGCAATCTGGACTGCAGGGGGGAGAGAGGCTCCCCGTGTGGAGGCGTGGCCCGGCTGTCTGTTTACAAGGTGGAGGAGAGACTGCCCGGCCACAGGAGATacAGGAACGTGCACTACCATGGCTGCTTCCAGGCACTAAAGAACTCCAGCAATGGCTTCCTGGTCCTCACCAGCCAGACCAACCTGACCTTGCAGCTGTGTGTGGAGATCTGTACAGATAGGGAGCTGCCATTAGCTGTAATGAGGAGGCGGGAGTGTCTCTGTGGCCACGCCTCCTCTCTTCTGAAAATGCAGAAGATCATAGAAGGACACTTATGTGGGAGGAACAGTCctataaaccacacccactccAATGACAAGGACTTCCTGCAGGTGTACAGCACACCTGTGCTAGATTCGAGGTGTAAGGAGAGGACGTTTCTGCCTGAGCGGTCCTCCTCACTCACAGCTCTGTCCAGTTTTCCTGGAGCAGGAAACACATGGGTCCGCCACCTCATTGAACTCTCCACCGGATACTACACAGGCAGCTACTACTTTGATGGCTCTTTATACAACAAAGGCTTTAAGGGAGAGAAGGATTACTGGCGGAGTGGGAGAACGATCTGTGTGAAGACTCATGAGAGCGgtcagagagagatagagctgtTCGACTCTGCTGTCCTCCTGATCCGCAACCCGTACCGCTGCCTGGTCGCCGAGTTCAACCGCAAGTGTGCTGGACACCTGGGCTACGCCCCAGACACCCACTGGAAGAGCAAAGAGTGGCCGGAGTTTATGGACAGCTACGCCTCCTGGTGGGCATCGCATGTTCTGTCCTGGTTGAAGTTCTCGCGCCGTTTGCTGGTGGTACATTACGAAGTGCTCCAGATGGACCTGCTTCCTCAGCTGAAGCTCATTACAGCCTTCCTGAACGCCAGCATCCCAGAGCACAGGCTGCTCTGCGCCGAGAGTAACCGCGACGGTCATTTCAAACGCCCCGGCTCCCGCGGCCTGACCTTCGACCCCTTCACTCCGGACATGAGGACTCGGATAGACGGCTATATCCTCTCAGTGGACCGGGCGCTGAGGGACAGGAATCTGAGCGGCCTGCCCCAGGAGTACATGCCCAGATAATGAGGACGAGCGGATAAGTGATTAAACAGAGAGGGAAAAAAGTGCCTGTAAACCCAAGCTTGACTGACAGCTCTTCTCGTGGCCTTGAGGaggtttatttatttggcaGTTCATTATCACACTGGCGCTTtcacttctctttctttctgtctttctgttttccTCCGAGATTCACCTGCCACTCAAACAAAGGGGTGGCTTTATTTGTGGTTTGTGTGCATTAAAATCCTGCTGCCAATCTG

Function

NR:

description
PREDICTED: WSC domain-containing protein 1-like

GO:

id name namespace
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244750.3 False 2448 mRNA 0.53 11 7739611 7759850
XM_015604641.2 False 2362 mRNA 0.54 10 7739628 7759850
XM_022680991.1 True 2483 mRNA 0.53 11 7739922 7759850

Neighbor

gene id symbol gene type direction distance location
LOC103040212 LOC108435805 coding upstream 54152 7683167 ~ 7685459 (+)
LOC103046439 NA coding upstream 426767 7298963 ~ 7312844 (+)
LOC103040527 LOC108435812,LOC106567758,LOC106603288 coding upstream 447132 7220371 ~ 7292479 (+)
LOC103047365 NA coding upstream 521936 7207081 ~ 7217675 (+)
ksr1 LOC107741140,LOC107583358,LOC107653729 coding upstream 537787 7146396 ~ 7201824 (+)
LOC103039588 LOC108435821 coding downstream 270425 8030275 ~ 8062760 (+)
LOC103042774 LOC108435823,LOC107743426,LOC107680328,LOC107570353,LOC107653702,LOC107583375,LOC107741170 coding downstream 375729 8135579 ~ 8143458 (+)
LOC103042468 NA coding downstream 385399 8145249 ~ 8148344 (+)
LOC103038957 NA coding downstream 414025 8173875 ~ 8186496 (+)
LOC103041846 LOC108433277 coding downstream 428879 8188729 ~ 8209285 (+)
G174176 LOC108435816 non-coding upstream 67751 7667401 ~ 7671860 (+)
G174170 NA non-coding upstream 94060 7644929 ~ 7645551 (+)
LOC103045725 NA non-coding upstream 358579 7358585 ~ 7381032 (+)
G174140 NA non-coding upstream 443249 7292882 ~ 7296362 (+)
G174031 NA non-coding upstream 661364 7077771 ~ 7078247 (+)
G174256 usp25,LOC107680319 non-coding downstream 123866 7883716 ~ 7892563 (+)
G174255 usp25 non-coding downstream 142950 7902800 ~ 7903842 (+)
G174263 NA non-coding downstream 246423 8006273 ~ 8064801 (+)
G174366 NA non-coding downstream 470458 8230308 ~ 8230617 (+)
G174408 NA non-coding downstream 738605 8498455 ~ 8498951 (+)
LOC103041160 NA other upstream 1198232 6536327 ~ 6541379 (+)
G173501 NA other upstream 2555834 5183491 ~ 5183777 (+)
nrarp nrarp,nrarpa other upstream 2586775 5103727 ~ 5152836 (+)
ptbp3 ptbp3,LOC106592370 other upstream 2835409 4800629 ~ 4904202 (+)
G173397 NA other upstream 2995362 4743569 ~ 4744249 (+)
G174259 usp25 other downstream 144745 7904595 ~ 7925440 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other downstream 389269 8149119 ~ 8166662 (+)
LOC103038455 NA other downstream 789034 8548884 ~ 8552610 (+)
rexo2 NA other downstream 1366858 9126708 ~ 9153133 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 2861178 10621028 ~ 10631765 (+)

Expression


Co-expression Network