LOC103047365


Basic Information

Item Value
gene id LOC103047365
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 7207081 ~ 7217675 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244757.3
gtgtgtgtgtgtgtgtggtgtttatgtaaagctgctgtCTGTACCTCTGCACCCTGTGTGCAGCAGCTCTGTGTTCCTGGCTGGTGGAGAAGCTGTGTGGAGATGGCCTTCCAGCAACCTTTTCTGAATCCGAGAATCCCCTTTACAGGCTGTATCCAGGGTGGCCTGTTTGAAGGGAAGTCCATCACTCTGACAGGACGAGTTCTGCCAGGAGCCGAGAGGTTTCATGTGAACTTGCAATGTGGCACCAAGGGCTCCCCAGATGTAGCTCTCCACTTCAACCCTCGCTACAGCGGATTCTTTGATGTTGTGGTGTGCAACACCTTCCAGAATTCAACCTGGGGCTCAGAGGAGCGGAGCTCCAAGATGTCACTGCCCCGAGGTTCCAGCTTCACCCTCACCTTCTTGGTCAACCGTGATTCCTATTCGGTGATTGTGAATGGAACTCATTTCCTGGATTACCTGCAccgtctctccatctctcttgtGAATGCGATCTATGTGGAGGGAGGTGTAGAGATCCATTCCATTGCTttccagaacccagctACTGCCTGTGTCCCACAGCCTGCCTTCATACAACAGagttATGGTGTCCCACAGACTGCCTTCATACAGCAGGCCACCTTTGTGCAACAGCCTGTCTTTCAACAACCGAGGGGTCAGAATAGAGGACGGAGCCGTAGACATCATAAcccaaagcagcagcagcatcatcatcagcagcagcagaagcagcatgCAGGATTGTACCAGgCACCTCCTCCATACAGCCCTCCACAGGCCTACGTTATGCCGTACAAAACAATTATCCAAGGAGGACTTTACCCTGGGAGAACCATCACCATCCAGGGTTTGGTCAACCAAGATGCAAACAGGTTCTGCATCAATCTGCGCTTCAACTCTGGCGTTGCTTTTCACTTCAACCCACGGCTCAATGACAACCAAGTGGTGCGCAACAGCCTGCTGCAGGAAAAGTGGGGTTCTGAGGAGAGGAACGGCGGCATGCCCTTCTACAGGGGCCAGCCCTTTACGGTGACCATCATCTGTGATACCCATTGCTACAGAATCATGGTCAACGGCACCCAAATGTTCACCTACAACCACCGATATACCCTGCTTCAGCAGATTGACATCCTGGAGGTGGAGGGGAATGTCAGTCTCAGTTCAGTCGTAGTATAaagggggattttttttttttgtctgaaaacCAGCATTCTCAGTACATTGTTTCTACCTTAATACCGTTTTTCCAAAATCTGACACTGTGTTTTGATATAGAACTTATTTGATATAGCACTTTGTGGGAGCCTGCCTCCCACTTTAAAGGTGAATTCCACCTTTAAACCACCTGTAAATAAAGTCAGTGAGTAAATAAAGAGTGGGTTTGGTGTAAAATGTTCCATTCTAAAGAAACTTTCCAATTCAGAATTGTTCTGGTTTGGGTTTAGAATGTACTGTACATTCACTTTTGAGGGAAGCGTGCATGAGGGGCATTGTAAGGTAAAATAGTCCCAAAAGaataaatcataaaacattagttaacaaattaacatttaacaatTAGTGATAAAATGAAGGTGTGGATAGTAAATAAAAGGGCTATATTTGTGTTGTAGTTTCCTTTCTATCTAGTTTCTTATTACCACCATTGTGAAGACTTTTAAGTCAACAGGTTTCTCTACAGtgattcattttaaatcaaacCCACACTCTTAAtaagacataaaaaataaatacttctaCCTCCAATTCGTCCAGATCTTACTTGTTTGAGGTGGCCACTCTATAAAAAGACCTGCCTTGTAGTTCCACCTTGCTGGTATTCAGACCATTAATTGGTGGTAAGTTGCTGTCCAGCTAATGGCTGGATAATATTGGGCCATGGACCCACTTTCAACCTTAATATGACACTAATGTGCTTTAAAAACTCTACTGAATACAACCCTGTCAGATAATACACTCATtacaacaccaaacacactACCATGCCTCTACAATGTCAGTGTCACTACTGTGCTGAAAATTGTCCACCACCTTATTCATGTGTCTTTAACAGCAGATGAATGGAATGGATGGGGCTCACTTATAACTGATGAACTACTGTAAAATTGTGTCATTTTAATCTGTATGGTGATTGGAAATACAAACAACATGGTCCTAAATGGCTAGTGACTTTTGTAGACATATCTTGATACTGAAAATTTTTACATGACTTGTTTCTTTGGGTcataactgcaaaaaaaatcttgtatttaGTGCTAAGATATTTTTGGTAAGCAAATGTTTAATCAATTTGATTTGTAGAAGTCTTTATCGACCTTCAGAAATAGCATCTGCTTTATTggtggcagttatgttcaggacAGAGGTTGACATAGTCAGTAATACAAAGTAATAGATTAATCAGTAACactaataaagataataaaatattttaataaaatataaagctcACTGTTTATTGCATCTGTGTGGTTTTCATATGTGTTTGTACCCCTTTAATGGTCAGTAAACATTTTTTGTGATCAAATCACTGTAATAAAAACTGCAAAATCCAA
>XM_007244758.3
gtgtgtggtgtttatgtaaagctgctgtCTGTACCTCTGCACCCTGTGTGCAGCAGCTCTGTGTTCCTGGCTGGTGGAGAAGCTGTGTGGAGATGGCCTTCCAGCAACCTTTTCTGAATCCGAGAATCCCCTTTACAGGCTGTATCCAGGGTGGCCTGTTTGAAGGGAAGTCCATCACTCTGACAGGACGAGTTCTGCCAGGAGCCGAGAGGTTTCATGTGAACTTGCAATGTGGCACCAAGGGCTCCCCAGATGTAGCTCTCCACTTCAACCCTCGCTACAGCGGATTCTTTGATGTTGTGGTGTGCAACACCTTCCAGAATTCAACCTGGGGCTCAGAGGAGCGGAGCTCCAAGATGTCACTGCCCCGAGGTTCCAGCTTCACCCTCACCTTCTTGGTCAACCGTGATTCCTATTCGGTGATTGTGAATGGAACTCATTTCCTGGATTACCTGCAccgtctctccatctctcttgtGAATGCGATCTATGTGGAGGGAGGTGTAGAGATCCATTCCATTGCTttccagaacccagctACTGCCTGTGTCCCACAGCCTGCCTTCATACAACAGagttATGGTGTCCCACAGACTGCCTTCATACAGCAGGCCACCTTTGTGCAACAGCCTGTCTTTCAACAACCGgCACCTCCTCCATACAGCCCTCCACAGGCCTACGTTATGCCGTACAAAACAATTATCCAAGGAGGACTTTACCCTGGGAGAACCATCACCATCCAGGGTTTGGTCAACCAAGATGCAAACAGGTTCTGCATCAATCTGCGCTTCAACTCTGGCGTTGCTTTTCACTTCAACCCACGGCTCAATGACAACCAAGTGGTGCGCAACAGCCTGCTGCAGGAAAAGTGGGGTTCTGAGGAGAGGAACGGCGGCATGCCCTTCTACAGGGGCCAGCCCTTTACGGTGACCATCATCTGTGATACCCATTGCTACAGAATCATGGTCAACGGCACCCAAATGTTCACCTACAACCACCGATATACCCTGCTTCAGCAGATTGACATCCTGGAGGTGGAGGGGAATGTCAGTCTCAGTTCAGTCGTAGTATAaagggggattttttttttttgtctgaaaacCAGCATTCTCAGTACATTGTTTCTACCTTAATACCGTTTTTCCAAAATCTGACACTGTGTTTTGATATAGAACTTATTTGATATAGCACTTTGTGGGAGCCTGCCTCCCACTTTAAAGGTGAATTCCACCTTTAAACCACCTGTAAATAAAGTCAGTGAGTAAATAAAGAGTGGGTTTGGTGTAAAATGTTCCATTCTAAAGAAACTTTCCAATTCAGAATTGTTCTGGTTTGGGTTTAGAATGTACTGTACATTCACTTTTGAGGGAAGCGTGCATGAGGGGCATTGTAAGGTAAAATAGTCCCAAAAGaataaatcataaaacattagttaacaaattaacatttaacaatTAGTGATAAAATGAAGGTGTGGATAGTAAATAAAAGGGCTATATTTGTGTTGTAGTTTCCTTTCTATCTAGTTTCTTATTACCACCATTGTGAAGACTTTTAAGTCAACAGGTTTCTCTACAGtgattcattttaaatcaaacCCACACTCTTAAtaagacataaaaaataaatacttctaCCTCCAATTCGTCCAGATCTTACTTGTTTGAGGTGGCCACTCTATAAAAAGACCTGCCTTGTAGTTCCACCTTGCTGGTATTCAGACCATTAATTGGTGGTAAGTTGCTGTCCAGCTAATGGCTGGATAATATTGGGCCATGGACCCACTTTCAACCTTAATATGACACTAATGTGCTTTAAAAACTCTACTGAATACAACCCTGTCAGATAATACACTCATtacaacaccaaacacactACCATGCCTCTACAATGTCAGTGTCACTACTGTGCTGAAAATTGTCCACCACCTTATTCATGTGTCTTTAACAGCAGATGAATGGAATGGATGGGGCTCACTTATAACTGATGAACTACTGTAAAATTGTGTCATTTTAATCTGTATGGTGATTGGAAATACAAACAACATGGTCCTAAATGGCTAGTGACTTTTGTAGACATATCTTGATACTGAAAATTTTTACATGACTTGTTTCTTTGGGTcataactgcaaaaaaaatcttgtatttaGTGCTAAGATATTTTTGGTAAGCAAATGTTTAATCAATTTGATTTGTAGAAGTCTTTATCGACCTTCAGAAATAGCATCTGCTTTATTggtggcagttatgttcaggacAGAGGTTGACATAGTCAGTAATACAAAGTAATAGATTAATCAGTAACactaataaagataataaaatattttaataaaatataaagctcACTGTTTATTGCATCTGTGTGGTTTTCATATGTGTTTGTACCCCTTTAATGGTCAGTAAACATTTTTTGTGATCAAATCACTGTAATAAAAACTGCAAAATCCAA

Function

GO: NA

KEGG:

id description
K10093 LGALS9; galectin-9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244757.3 True 2561 mRNA 0.42 12 7207081 7217675
XM_007244758.3 False 2452 mRNA 0.42 11 7207091 7217675

Neighbor

gene id symbol gene type direction distance location
ksr1 LOC107741140,LOC107583358,LOC107653729 coding upstream 5257 7146396 ~ 7201824 (+)
LOC103041127 LOC108435809,LOC108277236 coding upstream 66341 7101506 ~ 7140740 (+)
LOC103021605 vezf1a,LOC108435808,LOC107741171,LOC107653704,LOC107578318,LOC107697453 coding upstream 113022 7068860 ~ 7094059 (+)
LOC103040555 arl15b,LOC108433533,LOC107713334,LOC107595536,LOC107744085,LOC107686429,LOC108276853 coding upstream 448632 6661512 ~ 6758449 (+)
LOC103040857 LOC108433505 coding upstream 585924 6594232 ~ 6621157 (+)
LOC103040527 LOC108435812,LOC106567758,LOC106603288 coding downstream 2696 7220371 ~ 7292479 (+)
LOC103046439 NA coding downstream 81288 7298963 ~ 7312844 (+)
LOC103040212 LOC108435805 coding downstream 465492 7683167 ~ 7685459 (+)
LOC103044917 LOC108435817 coding downstream 521936 7739611 ~ 7759850 (+)
LOC103039588 LOC108435821 coding downstream 812600 8030275 ~ 8062760 (+)
G174031 NA non-coding upstream 128834 7077771 ~ 7078247 (+)
G174016 LOC108411648,LOC108276885 non-coding upstream 216305 6988724 ~ 6990776 (+)
G174000 NA non-coding upstream 241444 6920896 ~ 6965637 (+)
G173953 LOC108433532 non-coding upstream 564145 6642417 ~ 6642936 (+)
G173948 NA non-coding upstream 569967 6618834 ~ 6637114 (+)
G174140 NA non-coding downstream 75207 7292882 ~ 7296362 (+)
LOC103045725 NA non-coding downstream 140910 7358585 ~ 7381032 (+)
G174170 NA non-coding downstream 427254 7644929 ~ 7645551 (+)
G174176 LOC108435816 non-coding downstream 449726 7667401 ~ 7671860 (+)
G174256 usp25,LOC107680319 non-coding downstream 666041 7883716 ~ 7892563 (+)
LOC103041160 NA other upstream 665702 6536327 ~ 6541379 (+)
G173501 NA other upstream 2023304 5183491 ~ 5183777 (+)
nrarp nrarp,nrarpa other upstream 2054245 5103727 ~ 5152836 (+)
ptbp3 ptbp3,LOC106592370 other upstream 2302879 4800629 ~ 4904202 (+)
G173397 NA other upstream 2462832 4743569 ~ 4744249 (+)
G174259 usp25 other downstream 686920 7904595 ~ 7925440 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other downstream 931444 8149119 ~ 8166662 (+)
LOC103038455 NA other downstream 1331209 8548884 ~ 8552610 (+)
rexo2 NA other downstream 1909033 9126708 ~ 9153133 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 3403353 10621028 ~ 10631765 (+)

Expression


Co-expression Network