ranbp3l


Basic Information

Item Value
gene id ranbp3l
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 4354934 ~ 4379352 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244788.3
GCGTCTGGATCAGTATCACTGCCAGAAGCAGCGTGTACCTGACTCTCCGCGCTGCTGGATTAATCTTTACACCTTAACAGCACTTTTTACCGCCGGTTTAccgtgtttttatgtgtttatcaGTTTAATTTTAAACTCCAGCGCGTTTTAATCCGCTCTCTGCTCATTGAGGGGGATGCAGAGCTGAACTGATCTGAGGGGGGTATGAGAGGGACTCAGCCTCCTGCAGGATCTAATGCAGCCTGTCCCGGGATGATGGCTCTGTCTACGGGCTTCCCTGCGTCCTCACCCTCCGGTACAGTGCATGGAGTCTCGTTATCAGTGGATGACCCTTCTGGTGTACGGAGGGGTGCCTATTCCACAGCTGAAGATAAACCGGTACTGGTTCCACCGATGTTCGTCTTTCAGAAGATGACAGCTCCAGTGAAGAGGAGACCGGAGGAGGAAGGCAACGGAGCTGCTGTAAACAAGCGTGTCAGATCCATCACCTACCCCTCCTTACACAGTCGGAACAGAAAAGGTCCGTATGACAGCGTCAGACGAGTGCGCTCAACTTCGCTCTCCTTCCCACCGCCTTTACCTGtCTCCAGATCAAATGTGTTTATGCCTTCGAACCTGCACAACCCAAACAAGATCTCCACCAGTGCAGGGTCCTCTCAATCTAAGGTGAAGCGAACCATGCTGAGGCCGTCTCTTCTAGTAGCTCCTGGTCCATGGAACGGTCGAAACACACCTCATCTCAGACAgGTCAGGCTAAACACAGATGAGGAAATCTCCAGAGTTACTTTTGACCTCCCATCCTCGGCTGGGGCACTGGAGCAGCGGGCACTACCCCAGACTGGCAGAAGTCTGCTGGAGTCGGACTCGGCCATCGCCGGGAGCATCGAGTTTGTGTTTGGGGAGAATATGAGTGAGAGGGTTCTGaaacGGCCGTGCAGTGAGGACATGTCTGAATCCGACTGCAGCTCCACTGACTCGGACTCGTCCAGCTCAGAGGCAGCTGAGAACAGATCTGTAGGGAGTACGCTGTGGGAGTCAGCCACTGCTTACACTGCTGCTTGCAGAAGACGCTGTTTACTGAAACAAGTTCGAGTCTTCACCGGCGAGGAGAACGAGAGCAATGTTGTACAGcTGACGTGTAAGCTGTTTGTTCTGGAGAAGGGAACACAGTCatggagcgagagagggaggggagtGTTACGGCTGAACGACCTGGAAACTGGAGCCAAAGGCTGCTTACAGTCCAGAATGGTGATGAGGCACCAGGGCAGTCTGAAACTGATCTTGAACACCAAGCTgtaccctcacacacacctgcgGCGGCCGGCGCGGAGGAACTTACAGGTGACCGCTACAGATCTGGAGACCCACAGCATGCGAGTGTTCCTGATCCAGGGCAGCGCCAGAGACATCGCCCGCCTGTACGTGGCCATCCACCACAGACTGGTGGCCCTGCGCTGGAGTCCGGGGAACCTGACCGGAGAGACCAGGGAGGGGCACTGCAGCAGCGAGGAGGACGAGGATGAAGACGCAACAACTGGGGATCGTAACTGGAGGCACAGTCATTCCAGGTTCTGCCCTTGACCAGCCGACTGACCCGGTGCCTGAGGACGCTTCCCATCCTGCCTCTGCTCTCTGCCATTCCAGAGCACCTGTGAACACCATCACCTTCTGTGATCAGTCACAGAGCTGAAGACCAGCACAGGGACTTGTAACCAGCATGGAGGCAGCTGCTGCTGGTGATGAGCAGCGTATCTCTCTCAATGAACCACAATGAACCATTTGCCAAAGAACGAATGACTCTATACTGCATTATAAATGCTGTGAGGACACTTTATATTCTCTCCATGTTCTCCTGCTGTTTTCAGCTAAA
>XM_022680913.1
GCGTCTGGATCAGTATCACTGCCAGAAGCAGCGTGTACCTGACTCTCCGCGCTGCTGGATTAATCTTTACACCTTAACAGCACTTTTTACCGCCGGTTTAccgtgtttttatgtgtttatcaGTTTAATTTTAAACTCCAGCGCGTTTTAATCCGCTCTCTGCTCATTGAGGGGGATGCAGAGCTGAACTGATCTGAGGGGGGTATGAGAGGGACTCAGCCTCCTGCAGGATCTAATGCAGCCTGTCCCGGGATGATGGCTCTGTCTACGGGCTTCCCTGCGTCCTCACCCTCCGGTACAGTGCATGGAGTCTCGTTATCAGTGGATGACCCTTCTGGTGTACGGAGGGGTGCCTATTCCACAGCTGAAGATAAACCGGTACTGGTTCCACCGATGTTCGTCTTTCAGAAGATGACAGCTCCAGTGAAGAGGAGACCGGAGGAGGAAGGCAACGGAGCTGCTGTAAACAAGCGTGTCAGATCCATCACCTACCCCTCCTTACACAGTCGGAACAGAAAAGGTCCGTATGACAGCGTCAGACGAGTGCGCTCAACTTCGCTCTCCTTCCCACCGCCTTTACCTGtCTCCAGATCAAATGTGTTTATGCCTTCGAACCTGCACAACCCAAACAAGATCTCCACCAGTGCAGGGTCCTCTCAATCTAAGGTGAAGCGAACCATGCTGAGGCCGTCTCTTCTAGTAGCTCCTGGTCCATGGAACGGTCGAAACACACCTCATCTCAGACAgGTCAGGCTAAACACAGATGAGGAAATCTCCAGAGTTACTTTTGACCTCCCATCCTCGGCTGGGGCACTGGAGCAGCGGGCACTACCCCAGACTGGCAGTCTGCTGGAGTCGGACTCGGCCATCGCCGGGAGCATCGAGTTTGTGTTTGGGGAGAATATGAGTGAGAGGGTTCTGaaacGGCCGTGCAGTGAGGACATGTCTGAATCCGACTGCAGCTCCACTGACTCGGACTCGTCCAGCTCAGAGGCAGCTGAGAACAGATCTGTAGGGAGTACGCTGTGGGAGTCAGCCACTGCTTACACTGCTGCTTGCAGAAGACGCTGTTTACTGAAACAAGTTCGAGTCTTCACCGGCGAGGAGAACGAGAGCAATGTTGTACAGcTGACGTGTAAGCTGTTTGTTCTGGAGAAGGGAACACAGTCatggagcgagagagggaggggagtGTTACGGCTGAACGACCTGGAAACTGGAGCCAAAGGCTGCTTACAGTCCAGAATGGTGATGAGGCACCAGGGCAGTCTGAAACTGATCTTGAACACCAAGCTgtaccctcacacacacctgcgGCGGCCGGCGCGGAGGAACTTACAGGTGACCGCTACAGATCTGGAGACCCACAGCATGCGAGTGTTCCTGATCCAGGGCAGCGCCAGAGACATCGCCCGCCTGTACGTGGCCATCCACCACAGACTGGTGGCCCTGCGCTGGAGTCCGGGGAACCTGACCGGAGAGACCAGGGAGGGGCACTGCAGCAGCGAGGAGGACGAGGATGAAGACGCAACAACTGGGGATCGTAACTGGAGGCACAGTCATTCCAGGTTCTGCCCTTGACCAGCCGACTGACCCGGTGCCTGAGGACGCTTCCCATCCTGCCTCTGCTCTCTGCCATTCCAGAGCACCTGTGAACACCATCACCTTCTGTGATCAGTCACAGAGCTGAAGACCAGCACAGGGACTTGTAACCAGCATGGAGGCAGCTGCTGCTGGTGATGAGCAGCGTATCTCTCTCAATGAACCACAATGAACCATTTGCCAAAGAACGAATGACTCTATACTGCATTATAAATGCTGTGAGGACACTTTATATTCTCTCCATGTTCTCCTGCTGTTTTCAGCTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244788.3 True 1873 mRNA 0.54 14 4354934 4379352
XM_022680913.1 False 1870 mRNA 0.54 14 4354934 4379352

Neighbor

gene id symbol gene type direction distance location
LOC111195096 NA coding upstream 17239 4332873 ~ 4337695 (+)
LOC103042678 NA coding upstream 110905 4242168 ~ 4244029 (+)
LOC103029394 smad4a,LOC108435141,LOC107559658,LOC107668639,LOC107741365,LOC104924734,LOC107373891 coding upstream 1165234 3178378 ~ 3189700 (+)
LOC103031084 NA coding upstream 1181378 3170196 ~ 3173556 (+)
LOC111195007 LOC108435126 coding upstream 1198819 3142848 ~ 3156115 (+)
LOC103029159 NA coding downstream 3779 4383131 ~ 4389029 (+)
LOC103026990 ucp3,LOC103026990,LOC108433282,LOC108277383,LOC107578242,LOC105890488,LOC107743402 coding downstream 58688 4438040 ~ 4444030 (+)
ucp2 ucp2,ucp2b,LOC106567822 coding downstream 72902 4452254 ~ 4457565 (+)
rab6a rab6a,LOC106603351,LOC107741150 coding downstream 89740 4469092 ~ 4487880 (+)
LOC103024425 fam168a,LOC108433286,LOC108277059,LOC107600264,LOC107594362,LOC105011043 coding downstream 123766 4503118 ~ 4525930 (+)
G173259 NA non-coding upstream 38462 4313844 ~ 4316472 (+)
G173232 NA non-coding upstream 104971 4248872 ~ 4249963 (+)
G173182 NA non-coding upstream 308590 4046083 ~ 4046344 (+)
G173121 NA non-coding upstream 312974 4008213 ~ 4041960 (+)
G173119 pdlim5b,LOC108435134,LOC108277016 non-coding upstream 349277 3958740 ~ 4005657 (+)
G173268 NA non-coding downstream 13722 4393074 ~ 4400580 (+)
G173270 NA non-coding downstream 22684 4402036 ~ 4476650 (+)
G173272 rsf1b.1,LOC108277234,LOC107697440 non-coding downstream 29600 4408952 ~ 4410779 (+)
G173278 NA non-coding downstream 73517 4452869 ~ 4490753 (+)
G173279 mrpl48 non-coding downstream 84078 4463430 ~ 4466951 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other upstream 224452 4118034 ~ 4130482 (+)
G173111 LOC108435134,LOC108277016 other upstream 422943 3908942 ~ 3931991 (+)
G173094 NA other upstream 611729 3740302 ~ 3743205 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other upstream 615198 3465133 ~ 3739736 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other upstream 1628858 2718609 ~ 2726076 (+)
G173397 NA other downstream 364217 4743569 ~ 4744249 (+)
ptbp3 ptbp3,LOC106592370 other downstream 421277 4800629 ~ 4904202 (+)
nrarp nrarp,nrarpa other downstream 724375 5103727 ~ 5152836 (+)
G173501 NA other downstream 804139 5183491 ~ 5183777 (+)
LOC103041160 NA other downstream 2156975 6536327 ~ 6541379 (+)

Expression


Co-expression Network