LOC103038957


Basic Information

Item Value
gene id LOC103038957
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 8173875 ~ 8186496 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244815.3
TGCAGTGAAGCTCATGGCAGGAGCAGGGAGGATCTGGTTGAGTGTGTTTGTCCAGGCCGGCGTGATTTTGGCCTTTCCAGTGTTTCCCGCAGCACGGCCCAGCGATGCCGACCTGCAGTTTGCGGAGGGATATCTGGAGAAATTCTATGGTTTCAAGCCACAAGCTGGTCGACAGAAGCGAGTGGCAGAGTTTGACTCAGAAGGGTTTCCAGCCAAGCTAAAGGAGATGCAACAATTCTTTGGACTGGCTGAGAGTGGTGAGCTTGATCAGCAGACCCTCACTACCATGAGGAAAGGCCGCTGTGGTCTGTCAGACGCTGAGCAGTTTGGTGAGACCATGCGCTGGAGGAACCGAACTCTGACCTACAGATTCTCCAACTACCCCCCCAAGATGAAGCCCTCTCAGATCCGTAGAGTGTTCAAGGCAGCCTGGAGGCTCTGGGCCCAGGTAACACCTCTGAAATTCAGGAGGAGGGCGAGACGAGACGCAGACATTGAGATTTCCTTCAGCAACAAAGATCATGAAGATGGTGCACCGTTTGATGGTAAAGGGGGCGTTTTGGCCCATGCCTTCCTCCCTGGACCTGGAATTGGTGGAGATGTGCACTTTGATGCTGAGGAAGACTGGACAAGCAATACCACAGGTTATGACATTTTTGCTGTGGCTGTTCATGAGTTTGGACATGCTCTTGGTGTTTCTCATTCTTCTGACCCTGGAGCAGTCATGTACCCGGCCTATAATTTTGCTCCACATGATGAAATCCAGCTGTCCTTCCAGGATGTCAAAGACGTTCAGGAACTCTATGGTGAGAGTTCAGTCTTACTGGAAAAGCCACCGCCAAGAACGCCAGATAAGTGTGACCCTGATCTCTCCTTTGATGCAGTAACAGAATTACAACAAGAGGTTGTCTTTTTTAAGGACAGGTTCATGTGGCGAACGCACACCGATTTTAACGAAATAGGCATCACACTCATTAGAAGCTTATGGACTGGTATACCTACACACCTGGATGCTGCTTATGAGGACCTAACCAGCTACACCATGGTCTTTTTCAAGGGCTCTCAGTACTGGGAAGTGAAACATTTGGAAGTAAAAGATGGCTACCCAAAAAACATCTCGGATTTTGGTTTCCCATCCAGGATTAAGTCAGTTGATGCTACTCTTCATTTCCGGGAATACCATGTCACTGTGTTCTTCACTGGTAGAGAATGCTGGAGATACGATGAGGAGAAGCAGCAAATGATGGATGGCTATCCGAAGCTGATAAGTGATGAATGGCCAGGAGTCCCATCACCCATAGATGCTTCTGTAGCTTATAAAGGATTTGTCTACTTCTTCTTGGGGAACCTGCAGCTGGAATTCGATCTGAACCTTGGACGCATCACAAACAAAATGCTGGCGAACACATGGCTTAAATGTAGAGGACAAACGAATCAGCATGGCCATAGAAGGAGCTTCTTAAGTCATATGACTTAAGTCGTATGACTAGTACAAAAGCATGCTGCACTTTTTCTGTAATGGCTTCGTCACAGAGCGGATTAGGGAACTAAATTGCAGAAGTGACCTTCAACAACTGATCTACAACAAAAGCCTTTCTGGATGAGTTATTTGACACTGATCAGTCCAAGCGGTTTACCACATGTGCAGTCAATGAGTGAATGAAACACCAGGCAGGGAGTAATGATAGGATACTGTATGTTAATGTTTATGCCATATATGGTGATATGATGCTCACGTTTAAGCACAACCTGAACactgaataaatactgaatactttgATTTTTCCAAGCAACATCCTAATATAGGGCTCACATTGGTGGAACTTGGGCTAGGTGGGCTTCAGGTGGGCATGGGCTTTGAATAAGTTTGTacgtttttaatgtgtttttgttggGACCCAATAAGCTTGTCAAACAGACCATATTGAgtgtgttcacactgtgtgtGCACTTCATAATCCGATTACCGTACAACTTTAGAGTTTGttagtcaatcaatcaatcaatcatcaatcaatcaatcaatcaatcaatcaatcaatcaacctttatttccactcagTAATACATTGAaggtaaccctcattttttatttattttgtctttttaattatctaattttatgttttacctttttagccattttattttatttgttttattcaaatGATGGGCCAACCTAAAACCCATTGACAAAACCTTTTGATTCTCAGTTTGGTTATCCATACATGCCTCACATCTTAGGCATCTTATGTGAATTCTCAGTTTTAGTGTCCGCATTAGTGATGACTGGGATATCCGTACAGTCAAACCGAAACACTGCCCAAATGCTCACAATGTTTACTGCTGGTCTCCATCCACCTCCACCTTTTTGCCTTGGGCAGGGATTAATGCTGTATGTGTATGGATAAGGCTCACCATCTGCAGAAAACAGGCAAGTTCAAACCAGCAGAGGTGGGCTTCTTTGcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244815.3 True 2470 mRNA 0.44 10 8173875 8186496

Neighbor

gene id symbol gene type direction distance location
LOC103042468 NA coding upstream 25531 8145249 ~ 8148344 (+)
LOC103042774 LOC108435823,LOC107743426,LOC107680328,LOC107570353,LOC107653702,LOC107583375,LOC107741170 coding upstream 30417 8135579 ~ 8143458 (+)
LOC103039588 LOC108435821 coding upstream 111115 8030275 ~ 8062760 (+)
LOC103044917 LOC108435817 coding upstream 414025 7739611 ~ 7759850 (+)
LOC103040212 LOC108435805 coding upstream 488416 7683167 ~ 7685459 (+)
LOC103041846 LOC108433277 coding downstream 2233 8188729 ~ 8209285 (+)
LOC103038651 NA coding downstream 2724 8189220 ~ 8191739 (+)
LOC103041345 LOC108433277 coding downstream 8600 8195096 ~ 8198161 (+)
LOC103038343 NA coding downstream 30296 8216792 ~ 8223333 (+)
LOC111195015 LOC108433251 coding downstream 47315 8233811 ~ 8241060 (+)
G174263 NA non-coding upstream 109074 8006273 ~ 8064801 (+)
G174255 usp25 non-coding upstream 270033 7902800 ~ 7903842 (+)
G174256 usp25,LOC107680319 non-coding upstream 281312 7883716 ~ 7892563 (+)
G174176 LOC108435816 non-coding upstream 502015 7667401 ~ 7671860 (+)
G174170 NA non-coding upstream 528324 7644929 ~ 7645551 (+)
G174366 NA non-coding downstream 43812 8230308 ~ 8230617 (+)
G174408 NA non-coding downstream 311959 8498455 ~ 8498951 (+)
G174424 NA non-coding downstream 376014 8562510 ~ 8562865 (+)
G174438 NA non-coding downstream 469028 8655524 ~ 8658542 (+)
G174559 NA non-coding downstream 905945 9092441 ~ 9094096 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 7213 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 248435 7904595 ~ 7925440 (+)
LOC103041160 NA other upstream 1632496 6536327 ~ 6541379 (+)
G173501 NA other upstream 2990098 5183491 ~ 5183777 (+)
nrarp nrarp,nrarpa other upstream 3021039 5103727 ~ 5152836 (+)
LOC103038455 NA other downstream 362388 8548884 ~ 8552610 (+)
rexo2 NA other downstream 940212 9126708 ~ 9153133 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 2434532 10621028 ~ 10631765 (+)
G174874 LOC108437803 other downstream 2645672 10832168 ~ 11019418 (+)
G174994 NA other downstream 3243375 11429871 ~ 11436530 (+)

Expression


Co-expression Network