LOC103042678


Basic Information

Item Value
gene id LOC103042678
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 4242168 ~ 4244029 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244825.2
TACAGTAATGATCTTCAGTATCCAGGCTGTGTGACTGAGCCTATACAGACTAAGTGGCCGCATGGCTAAGCTTTAACAGACAACAATtccgcattttttttttttttatgttgtgtcGTGTGAGACAATGGAAACAAATCTGCCTAATCTACATTTATGCAAAGTGGGAGGAGACGTAAAAGACTGTCTCCATGGCCACACTTATGTAATTAGTGCATGATGACGCCACCGTCTGTCATTATAAAATCGTAGACTCGACCTTTCGTGCCACGGACTGCCAAAGGTGCTGTTTGGAACGACCGAGAACTCAGAATGGATGCAGAGGGCTGGATCAAATCTGTTATCAGAGGCTtgatgtgtgtgagtgggaTCATAGGAAACCACTGGCTAGGTTTTAGCGCCCTGCCCAAATCCAGAGCTCACCTCAAAACCAATGACATCCTATTCGTCAACTTGGCTTCATCCAATCTGATCACCAATTACATGGTGGACCTGCCGGACATGATGGACTTTACATACAACTTCATGATGGGACAGATGTATTGTAGTGTCTTCAATTTCTGCTCAGATCTCTCAGAGACCAGCAGCATCTTCACCACCCTGTTCATTACTGTGTTCTGGCACCAGAAGCTTGTGGGTTCTCTGAAGCGTGGTGGAGCTCCTGTGCAGATGGACAACATACGCCTAGTTGCTGCACTGCTGGCAGGAAGCTGGATTGTGGCAATTGCATTCAGCCTTCCTCATATATTCCTGGCCTCAAAGAATAATGGGAACAACACCTACTTCGAATGTCTGGAACACTATCCTTCTCTCGAAGCCAAGCAAGCCTATGACCTCATGTACCTTGTATTTGCAAACATCATTCCGATTATTGGGATCTTTTTCGCAAGCATCCAGATCACAGTTACACTGCTGCAGAATCAGAAAAGAATcaatagcaacaccacagcagtcACTACTGGAGCCAAGAACACCAAAATCACTCCAGCAGAGCCTTCTGTACACTCAAACCAGAGCTCACAAGAAGCAGTTAGTTACTCCAACGCTGTGGTACCCAACCCCGGACAAGCCAGGTCCAGCTCATCCTCCGGCAGTTTGCTGAGGGCTGCCAAGAGCGTGGTCACAGTGGCCACCATCTTTCTGATCTGCTGGGTAGTTCACGTCATCCTCCGCCTCATCAGCACCATCCAGGAGTCATCTCTAATTATGGAGCTGGCCAGTTATATAGGAGCAGCTTATACCTGTATCATCCCATACATTTACCTGCATGGGGTGAAGAAGTTCAGCTGTACCTGCAGAGGCTGAAGATCAGTCAGCTTGTAGAGTTCGTAGAGTCTGGAGCTTTCCCCAACCAGCTGCAATATGATAATAAGAGGGAAAAGACAGTCAGTGAGCTTTAAATGGTCGCAAAAGATATATagatgaatatataaatattgtggTACTGTTCATTTTTCCCCACATATTGTAATGCTTTAATAGCTTAATCtattattttgcacattttaaatactcacaaaacataaataacaaaatacataCAATGCAAATGAATGCAATTGTACAATATTCTATAAAACAGAATTTAAGATACAAGACATAATAACAACACAAACAAGACAAAGAAAATTGGTTTGAACAATGTCTATCAATAGTTATAGCAATATTTTCAAACACAGACAACATGTAGCAGATTATTATAAGATATGTATGCATTGCACAGGACTAAGTACACTTTAATAAAACATGCCAACATGTCAATATACACATTCTGATCAGAATAGCATATTCTATGTTATGATAAAATTCCTATAAAATATTGTAACCGAAAATAAcccaaataatattaatacattaagcAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244825.2 True 1862 mRNA 0.42 1 4242168 4244029

Neighbor

gene id symbol gene type direction distance location
LOC103029394 smad4a,LOC108435141,LOC107559658,LOC107668639,LOC107741365,LOC104924734,LOC107373891 coding upstream 1052468 3178378 ~ 3189700 (+)
LOC103031084 NA coding upstream 1068612 3170196 ~ 3173556 (+)
LOC111195007 LOC108435126 coding upstream 1086053 3142848 ~ 3156115 (+)
LOC103030033 NA coding upstream 1110532 3125086 ~ 3131636 (+)
LOC103031401 LOC108435143,LOC108276558 coding upstream 1117916 3098197 ~ 3124252 (+)
LOC111195096 NA coding downstream 88844 4332873 ~ 4337695 (+)
ranbp3l NA coding downstream 110905 4354934 ~ 4379352 (+)
LOC103029159 NA coding downstream 139102 4383131 ~ 4389029 (+)
LOC103026990 ucp3,LOC103026990,LOC108433282,LOC108277383,LOC107578242,LOC105890488,LOC107743402 coding downstream 194011 4438040 ~ 4444030 (+)
ucp2 ucp2,ucp2b,LOC106567822 coding downstream 208225 4452254 ~ 4457565 (+)
G173182 NA non-coding upstream 195824 4046083 ~ 4046344 (+)
G173121 NA non-coding upstream 200208 4008213 ~ 4041960 (+)
G173119 pdlim5b,LOC108435134,LOC108277016 non-coding upstream 236511 3958740 ~ 4005657 (+)
G173090 NA non-coding upstream 379974 3861105 ~ 3862194 (+)
G173079 NA non-coding upstream 863010 3378879 ~ 3379158 (+)
G173232 NA non-coding downstream 4843 4248872 ~ 4249963 (+)
G173259 NA non-coding downstream 69815 4313844 ~ 4316472 (+)
G173268 NA non-coding downstream 149045 4393074 ~ 4400580 (+)
G173270 NA non-coding downstream 158007 4402036 ~ 4476650 (+)
G173272 rsf1b.1,LOC108277234,LOC107697440 non-coding downstream 164923 4408952 ~ 4410779 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other upstream 111686 4118034 ~ 4130482 (+)
G173111 LOC108435134,LOC108277016 other upstream 310177 3908942 ~ 3931991 (+)
G173094 NA other upstream 498963 3740302 ~ 3743205 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other upstream 502432 3465133 ~ 3739736 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other upstream 1516092 2718609 ~ 2726076 (+)
G173397 NA other downstream 499540 4743569 ~ 4744249 (+)
ptbp3 ptbp3,LOC106592370 other downstream 556600 4800629 ~ 4904202 (+)
nrarp nrarp,nrarpa other downstream 859698 5103727 ~ 5152836 (+)
G173501 NA other downstream 939462 5183491 ~ 5183777 (+)
LOC103041160 NA other downstream 2292298 6536327 ~ 6541379 (+)

Expression


Co-expression Network