LOC103040533 (grm5,grm5a,LOC108423821,LOC107693909,LOC107720647,LOC107718729)


Basic Information

Item Value
gene id LOC103040533
gene name grm5,grm5a,LOC108423821,LOC107693909,LOC107720647,LOC107718729
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 32112356 ~ 32187729 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247261.3
TTCAGACTGTGCTGGGGTCTGTGGGAGCTGCGCGAGCTGCCGAGCTCAGTCCGGCTAGCTGGTTAGTGAGTGAAGCCTGGTGTTTAGTGCGCTCGAGCTTTAGAAGAGACACGCGGactgtgtatttacagtatatttacagctctcAGGCGCTCGAACAGAAGGAAGCGCGGGAAAACGCGCGCGACACGACATGCACGAGCCCGAGTCGACACACGGCGCTGAAGTGCGCGCGCAGACACCCGGAGACACCCAGCGCCGCGAGACACCAGCAACGGCGGGAAAACACGGGATAACGATGCCCTGAGGGATCTACCTGCATTCTGGCACAGACTGATCTGAAAGGCAGGCAGGAAATGGGGATTTTACTCTTCTTGCTCTTCTTTGCACTATTTGGAGATGGCACCCATCCCACAAGTCTGGGCACGCTGGTCAAGGCTCAGGCCACTGAGCGCCGGGTCTTGGCCCACATCCCTGGCGACATCATCATCGGGGCACTGTTTTCGGTGCACCACCAGCCGCCAGCGGACAAAGTCCACGAGCGCAAATGTGGTGCCGTCCGTGAGCAGTACGGCATCCAGCGTGTGGAGGCCATGATGCACACGCTGGACCGCATCAATGCCGACACCAACATCCTGCCCAATATCACTCTGGGGTGCGAGATCCGTGACTCCTGCTGGCACTCGGCTGTTGCTCTAGAGCAGAGCATTGAATTCATACGCGACACACTGGTCTcggctgaggaggaggagagcatGTCCAAGTGTGCGGCTGATGGTGGCGGAATGCCCATGAAAGGGAAGAAGCCCATAGTGGGTCTCATTGGACCTGGGTCTAGCTCAGTGGCCATCCAGGTCCAGAACCTTCTCCAGCTCTTCAACATCCCTCAGATCGCCTACTCTGCCACCAGCATGGACCTCAGCGACAAGTCCCTGTATAAGTACTTCATGAGGGTGGTGCCTTCGGATGCTCAGCAGGCCAGAGCCATGGTGGACATCGTCAAAAGATACAACTGGACCTACGTCTCGGCCATACACACTGAGGGAAACTATGGCGAGAGCGGAATGGAAGCCTTCAAAGACATGGCAGCTAAGGAGGGGATCTGCATTGCACATTCTGATAAAATCTACAGTAACGCCGGGGAGCAGAGCTTCGACCGGCTGCTGGAGAAACTGCGCAGCCACCTGCCCAAAGCACGCGTTGTGGCCTGCTTCTGCGAGGGAATGACCGTGCGAGGCATCCTAATGGCCATGAGACGCCGCCGCCTTGTGGGAGAGTTCCTATTGGTTGGCAGTGATGGCTGGGCTGATCGCTATGATGTAACAGATGGCTATCAGAGAGAGGCAGAAGGTGGCATCACCATCAAACTACAGTCTGCTTACGTCACTTGGTTCGATGACTACTACCTGAAACTGCAGCCAGACACAAATCAGCGGAACCCCTGGTTTGTTGAGTTTTGGCAACATCGCTTCCAGTGTCGGCTCAAAGGACACCCCCAGGAGAACACCAAATACAACCGCACCTGCACCAAAAAAGAATCTCTCGGGCATCACTACGCTCAGGATACTAAGATGGGCTTCGTCATCAACGCCATCTACAGCATGGCCTATGGTCTCCATGCCATGCAGAAAACACTGTGTCCAGGCTACAAGGGCCTGTGTGAGGCCATGAGACCCATCGATGGCCGCAAGCTCCTGGAGTTCCTCATGAGGACCAATTTCACTGGAGTATCGGGAGAAGTGGTGCTGTTTGATGAGAACGGGGACTCCCCTGGGAGGTACGAGATCATGAACTTTAAGCAGATGAGTGAGGAAGACTATAGCTACATCCATGTGGGCAGCTGGGATAACAGTGGACTGAAGATGAACGATGAGGAGATTTGGGCCAACAACAGTGCGATCATTCGCTCCGTCTGCAGTGAACCCTGCGAGAAAGCCCAGATTAAGGTGATCCGGAAGGGTGAGGTGAGCTGCTGCTGGACCTGTACTCCTTGTAAAGATAACGAGTATGTTTTTGATGAGTACACCTGCCGAGCCTGTGAGTTAGGATCCTGGCCAACAGATGACCTCACAGGGTGTGAGCCCATCCCAGTGCAGTACCTACTGTGGGGAGACCCTGAGCCCATCGCCGCTGTGGTCTTTGCTTGCCTCGGCCTCTTGGCTACCATCTTCGTGATGCTCATCTTCGTGAGGTTCCACGATACGCCTGTAGTGAAGTCCTCCAGCAGGGAACTTTGCTTCATCATCTTGGCTGGCATCTGTTTGGGCTACCTCTGCACCTTCTGCCTCATTGCAAAGCCCCATGTGGTTTACTGCTACCTACAGAGACTGGGCATTGGCCTCTCCCCTGCCATGAGCTACTCGGCTCTGGTCACCAAGACCAACCGCATTGCCCGGATCCTGGCTGGCAGCAAGAAGAAGATCTGCACCAAGAAGCCTCGTTTCATGAGTGCCTGTGCCCAACTGGTGATAGCTTTCATCCTCATCTTTCTCCAGCTGGCCATTATCGTGGCCCTGTTCATCATGGAGCCGCCTCAGGTGATCTACGACTACCCGTCCATCCGCGAGGTCCACCTCATCTGCAACACCACCACACTGGGGGTGGTGGCACCATTGGGCTACAACGGGCTGCTCATCCTCAGCTGCACCTTCTACGCCTTCAAAACACGAAATGTACCTGCCAACTTCAACGAGGCCAAGTACATCGCCTTCACCATGTACACCACCTGCATCATCTGGCTGGCCTTCGTACCCATCTACTTTGGCTCCAACTACAAGATTATCACCATGTGCTTCTCGGTCAGCCTCAGCGCCACCACAGCCCTGTGCTGCATGTTCGCCCCGAAGGTCTACATCATGCTGGCCAAGCCGGAGCGCAACGTGCGGAGCGCGTTCACCACCTCCACCGTGGTGAGGATGCACGTGGGCGACGGAAAGTCTGCATCAGCTGCCAGTCGCTCCAGCAGCTTGGCCAACCTATGGAGACGCCGTGGCTCTGGGACAGACAACGTCAGCTCTAATGGAAAAACGGTTACCTGGGCACAAAACGAGAGAGGCCACCGGCCGAACCTGTGGAAACGCATCTCTATTCACATCAAGAAAAAGGAGGAGAGCAACCAGACAGCTATCATCAAACCCTTCTCCAAGGGATGCGATGCCCCTCCAGACACAGGGGTGAAGGCGTCCTACGAGAGGCCTCAGAGCGCCCCACGATACCCTGTGACCTACCGCCCTCGCACACCCTCCCCTCTGCCCACCGTGTGCCAGCGAGGGTCAGTGCAGCGATGCTGTGAGGACGAGGAAGCTGCCAGAGATCGCAAAAGAGAAGAGTCCGTCAGAGAGCGGCAGCCGCCGGTGGTAGCCTTGCCCACGTACCTCACCGAAAGGTCACAACGAAGCGGACCGCAACAGACGTCCATCATGGATCAGATCACCTGTGTGGTGAACCGCTTCACGGCCAACATCAGCGAGCTcaacagcatgatgctgccgaCCAACTCGCCTCCGGGTTCGTCCCTTAACAACTCCGGCCCCAGCTCACCCACCTTCAGGCTGCTCCCCCGAGAAATCCCACAGATTTCCACCACAGTGACCACCTACGCAGAAGTGGTGGCTGCAGCCAACGCCACTCCGCACTCTGCAGTGGGCATCACCGGAGGCATAATCACCGGCGGGAGTAGCCGGGGATCTCCCGCTAGTCTCTCCGAGAGCACCTATGACTCTTCGTCACAGGTGAGGACCACTGAACTGGAGGAGCTGGCCGCCCTCACACCCCCATCCCCATTTAGGGACTCCTCAATGGGTTCGGCCAGCGACTCCCCGACCTCGCCAGACTCCGAGCTGGCCCTGTGTCAGCCTTGCTCCCCAAAGTACGACCGACTGATGCTGCGCAACTACAGCCAGAGCTCCTCCTCGCTGTAAACACCTCACCCCAAGGGTCCTCCTCTTAAAGAAGTGGAAGGATGAGGGCATTCTGAACACTAGTCTAGGTTGAGActaattttgattttgattttgaatcTGATTCGCTTTTTGTCTGGTTCCAAAGTAAGTATGGACTTTGGAAGTTTGGACACTTTGCTGCAGGATTTGCAAGAACAAGAACTTGGAATGAATACAATGGAAAATTGTCTAAACTTCAAATGTAAGTGCTTGTGGTCTCTTAAACACAATGGCACCCAGAAAAAGGAAAGTATGGTCTTGTAATGGAACATTTCCTTATTGATGAGCGTAAGTAACTAAGAGGAAATACAGTGCTCCACAAAGTTTACATACATGACTGAAAATATTCCTGAAGAcaaatgtgtatgtgtataatcTGACTGAATAAGGGAAAACTATGGTGTGAAACAACACCTGGAGGTGTTTCTTTGGACCTCAGTGAACTGTGGATTCAGACGATATCCTGTGCTCGACCTTCAGCCAGTGACACATTCCAACGATGTCAATCAACTGAGATTtttaagacaaaacaaaaatccaCACGTTAAAACAGAGGCATTTGTCGTTTGTACGCAAGGCTGTCCGCTGGCTATGAAAGTTGCACAATCATCTACATACAATCATCAACGGCAAACATCGAATGTAGATTTTTAGGTAGTATGGGACCAAATCTTCTCTTAGAAGGAATGTTTGATAGCAGTGTTTGTCTTttgcgacttttttttttctttttcattttacaaGTGACGGTGTTTcatgataaatataaatacaattaaatttccaatttcttaaaaaaaatcatctagTGAGCCAAATTGTTATTGAAATGATCTGAAAGATCTAAATCTAAATTGccttttttgctatttacacaATTATTAACCCTtaagagcccagacccatttctgaatattgatatcAAGTTCAAACTCAAATAAGATAAATGTActgagcagctcatttatgtttattttttattgtgggCACAtgagtgtaaatattttaaggttaaaatcatgatgtaacataaaaaacacaaagatacaaaatttgtatctgtattttactgttttgtacTATAAATCAGGACAGAGCTAGTTATAtagaacataaaacattaattaaagctTTTGAATCGTTACAAGATTTGGAACAGAGCTGTAAAAGCAAATAATACACTTCTAAAAgaagctagttttatctccagcactaactcAGCACACCTATATTTTGAATTGTGATTACTGTGGAAAAGTATTTGCCCTCCAGATTTTTTtaagctgttgtgtttttgccaCACATCATGGTTTCACATATTCAACCACATTTTAATTGAAGACAAcctaaacaaaaacaacatacatttttttaattaacatttcatGTATTGAAGGGAGGCCAACTGGTCCTGTGTGAAAACCTACAATCATTAGCCTAATagttttttaattaagtaaataacCAAATTTGGTAATTTGGTAGTGGATAATTGGGTAAATTTAGTTAGACACTCGCATTACAGAAATTCTGAAAAATTGGGCTACAGTTACTTCACAGTTTTGTAATAAGACTAATCTCCATTTATACCAACCATTTGTTTCGAGATATTGCATATTAATATAGCTATTAAGGTAATACAATGTAATAAATGCCTTTTTAAATGGGTGATAATGGTGCT

Function

symbol description
grm5a Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain and retinal inner nuclear layer. Orthologous to human GRM5 (glutamate metabotropic receptor 5).
grm5 Enables G protein-coupled receptor activity; glutamate receptor activity; and identical protein binding activity. Involved in several processes, including calcium-mediated signaling using intracellular calcium source; cellular response to amyloid-beta; and regulation of cellular protein metabolic process. Is integral component of plasma membrane.

NR:

description
PREDICTED: metabotropic glutamate receptor 5-like

GO: NA

KEGG:

id description
K04604 GRM5; metabotropic glutamate receptor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247261.3 True 5622 mRNA 0.50 9 32112356 32187729

Neighbor

gene id symbol gene type direction distance location
LOC103030242 chordc1 coding upstream 25913 32073627 ~ 32086443 (+)
LOC103032011 NA coding upstream 752088 31349241 ~ 31360268 (+)
mpzl1 LOC108423808 coding upstream 797917 31295065 ~ 31314439 (+)
ets2 ets2 coding upstream 867472 31237788 ~ 31244884 (+)
kcnj15 kcnj15 coding upstream 995661 31112015 ~ 31116695 (+)
LOC103040837 rab38,LOC103040837,LOC108423822,LOC108277304,LOC107701102,LOC107718792,LOC107557212,LOC107693892 coding downstream 3119 32190848 ~ 32205776 (+)
map3k7cl map3k7cl coding downstream 93550 32281279 ~ 32298945 (+)
bach1 NA coding downstream 118728 32306457 ~ 32322948 (+)
LOC111195090 NA coding downstream 455783 32643512 ~ 32650332 (+)
LOC103029275 NA coding downstream 500024 32687753 ~ 32691484 (+)
G180426 kpna7,LOC103041448,LOC108423764,LOC108277302,LOC107693907,LOC107720648,LOC107556882 non-coding upstream 15547 32041645 ~ 32096809 (+)
G180403 NA non-coding upstream 192667 31919275 ~ 31919689 (+)
G180402 LOC108423819 non-coding upstream 197707 31913867 ~ 31914649 (+)
G180401 LOC108423819 non-coding upstream 217321 31892834 ~ 31895035 (+)
G180399 NA non-coding upstream 230652 31881407 ~ 31881704 (+)
G180472 NA non-coding downstream 25627 32213356 ~ 32213907 (+)
G180488 NA non-coding downstream 120800 32308529 ~ 32309577 (+)
G180490 NA non-coding downstream 141452 32329181 ~ 32330732 (+)
G180504 NA non-coding downstream 248641 32436370 ~ 32445624 (+)
G180510 NA non-coding downstream 263303 32451032 ~ 32488971 (+)
G180266 NA other upstream 678447 31433198 ~ 31433909 (+)
G180235 erg other upstream 961261 31139344 ~ 31151095 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 4586915 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 5196012 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 5233273 26830637 ~ 26879083 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 77269 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 862513 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 1985195 34172924 ~ 34328970 (+)
LOC103024954 LOC108423745 other downstream 2146847 34334576 ~ 34507324 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other downstream 3204792 35392521 ~ 35403624 (+)

Expression


Co-expression Network