LOC103041448 (kpna7,LOC103041448,LOC108423764,LOC108277302,LOC107693907,LOC107720648,LOC107556882)


Basic Information

Item Value
gene id LOC103041448
gene name kpna7,LOC103041448,LOC108423764,LOC108277302,LOC107693907,LOC107720648,LOC107556882
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 32090689 ~ 32096800 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247264.3
GTTGAAATTCAGTGAGTAGAGGTGTGGTTGGAGTAGAAGGCTGTTGTTGGTCTTTAGCGTCTCtttatttgtaaagttttgtgtgTAGGTcgttttatctgtttatttttgggcTTTTTGCCTCGCAAGGTAAACCTGCACAATGCCTACTGAAAACCTGACCGATAAACGCCTGTCCAAGTTCAAAAACAAGGGCAAGGACCCACTGAAAATGCGTGAACGCAGAGTTGCTGAGTGTGTTGAACTCCGTAAAGCACAGAGGGTGGAGAGTATCCTAAAGAGACGAAACATTGAGTTTCAGCCTGTGGAAGAGCCCCTGTCACCAGAATACAACACTGACAACCAACAGGTAATTTCTGCAACAATTCAGGAGATTATTGAGAATGTTAACAGTGACTGTCCAGAGAGACAGACTCAGGGTTGTCAGACGGCCAGGAAACTACTCTCTCGGGAAAGGAACCCTCCACTGAAGGAGGTTGTGGAGGCTGGGCTGTTGTCCCGATTCGTGGAGTTCTTGAGCAGGAACGATAATCCCACTCTGCAGTTTGAGGCTGCTTGGTCCCTCACCAATGTGGCATCAGGAACCTCTTGGCACACGCAGCAGGTGGTGGAACACGGAGCAGTGCCTGCCTTCATTTCGCTATTGGCCTCACCTATGCTCAACATAAGTGAACAGGCAGTCTGGGCCCTGGGCAACATTGCAGGTGACGGCCCTTCATATAGAGATGCACTTATAGACTGCAACGTGATCCCTGCTCTACTGGCTCGCCTAACACCTGATGCTCCAGTCGGGTACCTCCGCAACTTGACATGGACCCTCTCGAACCTGTGCAGGAACAAGAACCCCTTCCCACGCTTCTCTGCTGTCCAGCAGATGCTGCCTTCCATTATACAGCTACTTCATCATAGTGACAAGTCTGTCTTGTCGGACGCATGCTGGGCAATCTCCTACCTCACTGATGGACCTAATGAGCGGATTGATGTTATAATTAAAACTGGAATCCTTCCACGGCTGGTTGAGCTGCTGACCTTTGAGGAGCTTGCAGTTGTGACTCCAGCACTGCGCTCTATTGGGAACATTGTGAGTGGTTCAGATGTACAAACCCAGGCAGCCATTGATGCAGGGGTGCTGACTGCCTTGCCTAAACTAATGCGCCATCCCAAACCCAATGTCCAAAAGGAGGCAGCTTGGGCTGTTTCCAACATTGCAGCTGGACCACGCCCACAGATCCAGCAGCTAATCACATGTGGACTGCTGTCCCCCCTTGTGGACCTACTGAAGAATGCTGACTTTAAAACTCAGCGGGAAGCCGTCTGGGCAGTCACCAACTACACCAGTGGAGGGACTGTGGAGCAGGTAGTCCAACTCGTCAAGTGTGGAGGCCTGGAAGCCATCTTAAATCTTCTCACTGTCAAAGATGCCAAGACTGTGTTGGTCATTCTGGATGCCATCAATAACATTTTCTTGGCTGCTGAGAAGCTTGGAGAAGTGGAGAAGCTTTGCTTGCTTGTGGAAGAGCTGGGTGGACTGGATCGCATTGAACTCCTCCAGAACCATGAAAACAATACTGTGTATCGTGCTGCTCAAGCACTCATTGAAAAATACTTCAGTGAGgatGCTGCAGATGAATGCTTGAAAACTGAGGCAACTGAAACTGACTTTGTTTTTGGACCAACTGAAGTCCAAAGAAGATTTGATTtttgattactttttttatgcCTGTtggttttgtataaataaatatatattttggcagTA

Function

symbol description
kpna7 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Orthologous to human KPNA7 (karyopherin subunit alpha 7).

NR:

description
importin subunit alpha-5-like

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247264.3 True 1759 mRNA 0.48 10 32090689 32096800

Neighbor

gene id symbol gene type direction distance location
LOC103030874 mtnr1bb,LOC103030874,LOC108423763,LOC107720651,LOC107693905,LOC108276622,LOC105890457 coding downstream 242720 31761901 ~ 31847969 (-)
LOC103041957 NA coding downstream 549214 31519076 ~ 31541475 (-)
LOC111195087 NA coding downstream 581468 31499084 ~ 31509221 (-)
timm10b timm10b coding downstream 593971 31493584 ~ 31496718 (-)
ilk ilk,LOC107718724,LOC107720653 coding downstream 600328 31466629 ~ 31490361 (-)
LOC103041136 LOC108423765 coding upstream 3401 32100201 ~ 32106911 (-)
cct8 cct8,LOC107693911,LOC107701129 coding upstream 168197 32264997 ~ 32276777 (-)
LOC103038234 grik1,grik1a,LOC107701130,LOC107693913,LOC107718733,LOC107555187 coding upstream 246539 32343339 ~ 32428813 (-)
sod1 sod1,LOC106604042 coding upstream 554518 32651318 ~ 32658440 (-)
scaf4 scaf4,LOC106950580,LOC106934797 coding upstream 564416 32661216 ~ 32680718 (-)
G180454 chordc1 non-coding downstream 10865 32077364 ~ 32079824 (-)
G180366 NA non-coding downstream 331251 31758098 ~ 31759438 (-)
G180373 NA non-coding downstream 347699 31742731 ~ 31742990 (-)
G180344 NA non-coding downstream 454141 31636347 ~ 31636548 (-)
G180342 NA non-coding downstream 508752 31581704 ~ 31581937 (-)
G180543 NA non-coding upstream 108321 32205121 ~ 32208569 (-)
G180540 NA non-coding upstream 166774 32263574 ~ 32264739 (-)
G180562 NA non-coding upstream 225301 32322101 ~ 32326822 (-)
G180570 NA non-coding upstream 359746 32456546 ~ 32457411 (-)
G180576 NA non-coding upstream 457779 32554579 ~ 32558540 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other downstream 18765 31894202 ~ 32071924 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 1132922 30946946 ~ 30957767 (-)
G179816 NA other downstream 3239584 28850690 ~ 28851105 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 4523997 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 4565301 27524328 ~ 27525388 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 143379 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 339525 32436325 ~ 32584343 (-)
LOC103033173 NA other upstream 1708440 33805240 ~ 33855632 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 3336432 35433232 ~ 35470789 (-)

Expression


Co-expression Network